MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-279-o50

Family name MIR-279 (all species)
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-279-o51  Snu-Mir-279-o52 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) S. nudus
Node of Origin (family) Protostomia
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049306.1: 43854721-43854776 [-]
Clustered miRNAs
(< 50kb from Mir-279-o50)		 Mir-279-o52 CM049306.1: 43836958-43837018 [-]
Mir-279-o50 CM049306.1: 43854721-43854776 [-]
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
GAUCUGCUGAGACUGAUCAUUGUCUGUUUGGUGGGUGUGGUUCUAGCCCAUGUUUAUCCAGGUCAUGACUAGAUACACACUCAUCAAACAGCUGGGUCAUUACAUCACACAAUCUU
Get precursor sequence
Structure
        10        20           30        40        50        
GAUCUGCUGAGACUGAUCAUU---|U                GU     CC    UUUAU 
                        G CUGUUUGGUGGGUGUG  UCUAG  CAUG     \
                        C GACAAACUACUCACAC  AGAUC  GUAC     C
UUCUAACACACUACAUUACUGGGU^-                AU     A-    UGGAC 
    110       100         90        80        70         60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Snu-Mir-279-o50_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUGGGUGUGGUUCUAGCCCAUG -22
Get sequence
Mature sequence

Snu-Mir-279-o50_3p
mirBase accessionNone
Sequence 
35- UGACUAGAUACACACUCAUCA -56
Get sequence