MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-279-o43

Family name MIR-279 (all species)
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-279-o37  Efe-Mir-279-o38  Efe-Mir-279-o39  Efe-Mir-279-o40  Efe-Mir-279-o41  Efe-Mir-279-o42 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.1381559: 71-129 [-]
Seed GACUAGA
Precursor
(pre-Mir +30nt flank)		 
NNNNNNNNNNAGCGAGGCAGAUUAUCGGCGGACGGGUGUAUUUCUCGUCCAUGUUGGCGAUCUAUCAUGACUAGAUCUACACUCGUCCGUCGAGCUCUGGGACCAACGAGGUGUGCAUU
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Structure
        10           20        30        40        50         
NNNNNNNNNNAGCGAGG---|   UUA                UU   C   C   UUGGC 
                    CAGA   UCGGCGGACGGGUGUA  UCU GUC AUG     G
                    GUCU   AGCUGCCUGCUCACAU  AGA CAG UAC     A
UUACGUGUGGAGCAACCAGG^   CG-                CU   U   -   UAUCU 
       110       100         90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Efe-Mir-279-o43_5p* (predicted)
mirBase accessionNone
Sequence 
0- GACGGGUGUAUUUCUCGUCCAUG -23
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Mature sequence

Efe-Mir-279-o43_3p
mirBase accessionNone
Sequence 
37- UGACUAGAUCUACACUCGUCCG -59
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