| MirGeneDB ID | Efe-Mir-279-o40 |
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| Family name |
MIR-279 (all species) |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-279-o37
Efe-Mir-279-o38
Efe-Mir-279-o39
Efe-Mir-279-o41
Efe-Mir-279-o42
Efe-Mir-279-o43
|
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| Orthologues |
Agr-Mir-279
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Efe_combined) |
Efet.01.77336: 1798-1860 [+]
|
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| Seed |
GACUAGA |
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Precursor
(pre-Mir +30nt flank) |
GAUUCGAAUACAGGCUACCGAACUGCCGAAGGUGUUUGGCCAUCUGGUGCAUGUUAAAGGAAUCAAAGGUCAUGACUAGAUGUACACUCAUCUCCGGGGUAUCGGUGUUCGUCUUCGUUGGGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAUUCGAAUACAGGCUA- -| G A UU GC G UUAAAGGA
CCGA ACU CCG AGGUG UG CAUCUGGU CAUG \
GGCU UGG GGC UCUAC AC GUAGAUCA GUAC A
UGGGUUGCUUCUGCUUGU A^ - C UC AU - UGGAAACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-279-o40_5p* |
| mirBase accession | None |
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| Sequence |
0- GGUGUUUGGCCAUCUGGUGCAUG -23
Get sequence
|
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| Mature sequence |
Efe-Mir-279-o40_3p |
| mirBase accession | None |
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| Sequence |
42- UGACUAGAUGUACACUCAUCU -63
Get sequence
|
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