MirGeneDB 3.0
129 Euprymna scolopes microRNA genes
Sort by genome coordinates Motifs Tissue expression
- +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC Li
Esc-Bantam None BANTAM GAGAUCA None None CM044512.1 77471093 77471154 - Protostomia Protostomia No
Esc-Let-7 None LET-7 GAGGUAG None None CM044492.1 84769229 84769297 - Bilateria Bilateria No 1
Esc-Mir-1 None MIR-1 GGAAUGU None None CM044489.1 10413533 10413592 - Bilateria Bilateria No 1
Esc-Mir-2-o45 V None MIR-2 CACAGCC None None CM044488.1 27565591 27565650 - Cephalopoda Protostomia 2 No 1
Esc-Mir-2-o47a V None MIR-2 CACAGCU None None CM044488.1 27564797 27564854 - Coleoidea Protostomia 2 No 1
Esc-Mir-2-o47b None MIR-2 AUCACAG None None CM044488.1 27564469 27564528 - Coleoidea Protostomia No 1 1
Esc-Mir-2-o47c None MIR-2 AUCACAG None None CM044488.1 27564000 27564059 - Coleoidea Protostomia No
Esc-Mir-2-o47d None MIR-2 AUCACAG None None CM044488.1 27563803 27563860 - Coleoidea Protostomia No 1 1
Esc-Mir-2-o48 V None MIR-2 CACAGCC None None CM044488.1 27562855 27562918 - Cephalopoda Protostomia 2 No 1 1
Esc-Mir-2-o49 None MIR-2 CAUCAAA None None CM044488.1 27562752 27562815 - Cephalopoda Protostomia No
Esc-Mir-2-P12 None MIR-2 AUCACAG None None CM044488.1 27565399 27565460 - Lophotrochozoa Protostomia No 1
Esc-Mir-7 None MIR-7 GGAAGAC None None CM044491.1 61028691 61028751 - Bilateria Bilateria No 1 1 1
Esc-Mir-8 None MIR-8 AAUACUG None None CM044529.1 29278129 29278189 - Nephrozoa Nephrozoa No 1 1
Esc-Mir-9 None MIR-9 CUUUGGU None None CM044491.1 123669224 123669285 + Bilateria Bilateria No 1
Esc-Mir-10-P3 None MIR-10 CCCUGAG None None CM044492.1 84692847 84692903 - Bilateria Eumetazoa No 1
Esc-Mir-10-P6 None MIR-10 UUACCCU None None CM044495.1 118224997 118225057 - Neotrochozoa Eumetazoa No 1
Esc-Mir-12 None MIR-12 GAGUAUU None None JANFOI010000056.1 178869 178928 + Protostomia Protostomia Unknown 1
Esc-Mir-22-P1 None MIR-22 GCUGCCU None None CM044488.1 31958202 31958259 - Bilateria Bilateria No 1
Esc-Mir-22-P2 None MIR-22 AGCUGCC None None CM044488.1 31957359 31957414 - Bilateria Bilateria No 1 1
Esc-Mir-29-P1 None MIR-29 AGCACCA None None CM044522.1 25401895 25401956 - Bilateria Bilateria No 1
Esc-Mir-29-P2 None MIR-29 AGCACCA None None CM044522.1 25186357 25186413 - Bilateria Bilateria No 1
Esc-Mir-31 None MIR-31 GGCAAGA None None CM044502.1 99371074 99371131 - Bilateria Bilateria No 1
Esc-Mir-33 None MIR-33 UGCAUUG None None CM044487.1 128755265 128755323 - Bilateria Bilateria No 1 1
Esc-Mir-34 None MIR-34 GGCAGUG None None CM044492.1 83666232 83666290 - Bilateria Bilateria No
Esc-Mir-36-P14 None MIR-36 CACCGGG None None CM044508.1 49502213 49502274 - Coleoidea Protostomia No
Esc-Mir-36-P15 None MIR-36 CACCGGG None None CM044508.1 49501410 49501467 - Coleoidea Protostomia No
Esc-Mir-71 None MIR-71 GAAAGAC None None CM044488.1 27565864 27565922 - Nephrozoa Nephrozoa No
Esc-Mir-76 None MIR-76 UCGUUGU None None CM044501.1 38963160 38963220 - Nephrozoa Nephrozoa No
Esc-Mir-87-o6 None MIR-87 UGAGCAA None None CM044525.1 54031820 54031880 - Coleoidea Protostomia No 1
Esc-Mir-92 None MIR-92 AUUGCAC None None CM044488.1 167917675 167917733 + Bilateria Bilateria No 1
Esc-Mir-96-P1i None MIR-96 AUUUGGC None None JANFOI010000614.1 14864 14924 + Mollusca Bilateria Unknown 1 1
Esc-Mir-124 None MIR-124 AAGGCAC None None CM044493.1 77368617 77368674 + Bilateria Bilateria No 1
Esc-Mir-133 None MIR-133 UGGUCCC None None CM044489.1 10389932 10389995 - Bilateria Bilateria No 1 1
Esc-Mir-137 None MIR-137 UAUUGCU None None JANFOI010000829.1 143596 143655 + Bilateria Bilateria No
Esc-Mir-153-P18a None MIR-153 UGCAUAG None None CM044498.1 49351421 49351478 + E. scolopes Bilateria No 1
Esc-Mir-153-P18b None MIR-153 UGCAUAG None None CM044498.1 49351421 49351478 + E. scolopes Bilateria No 1
Esc-Mir-184 None MIR-184 GGACGGA None None CM044502.1 118389508 118389566 - Nephrozoa Nephrozoa No 1
Esc-Mir-190 None MIR-190 GAUAUGU None None CM044488.1 167707026 167707089 + Bilateria Bilateria No 1 1 1
Esc-Mir-193-P1 None MIR-193 ACUGGCC None None CM044495.1 64797055 64797114 - Bilateria Bilateria No 1
Esc-Mir-210-P15 V None MIR-210 UUGUGCG None None CM044505.1 75028088 75028142 - Coleoidea Bilateria 2 No
Esc-Mir-210-P16 None MIR-210 UGUGCGU None None CM044505.1 75480404 75480462 + Coleoidea Bilateria No 1 1 1
Esc-Mir-216-P1 None MIR-216 AAUAUCA None None JANFOI010000056.1 172660 172717 + Nephrozoa Nephrozoa Unknown
Esc-Mir-216-P2d None MIR-216 AAUCUCA None None JANFOI010000056.1 177212 177271 + Lophotrochozoa Nephrozoa No 1
Esc-Mir-219 None MIR-219 GAACUGU None None CM044505.1 88768776 88768833 + Bilateria Bilateria No 1
Esc-Mir-252-P1 None MIR-252 UAAGUAG None None CM044528.1 902736 902793 + Bilateria Bilateria Unknown 1
Esc-Mir-277 None MIR-277 AAAUGCA None None CM044492.1 83674415 83674477 - Protostomia Protostomia No 1 1
Esc-Mir-278 None MIR-278 CGGUGGG None None CM044488.1 97422133 97422193 - Bilateria Bilateria No 1
Esc-Mir-279 None MIR-279 GACUAGA None None CM044508.1 49535256 49535317 - Protostomia Protostomia No 1
Esc-Mir-281 None MIR-281 AGGGAGC None None CM044521.1 56091471 56091527 - Nephrozoa Nephrozoa Unknown 1
Esc-Mir-315 None MIR-315 UUUGAUU None None CM044515.1 29695665 29695725 + Nephrozoa Nephrozoa No 1 1
Esc-Mir-317 None MIR-317 GAACACA None None CM044492.1 83769329 83769388 - Protostomia Protostomia No 1
Esc-Mir-375 None MIR-375 UUGUUCG None None CM044524.1 15433043 15433102 + Nephrozoa Nephrozoa No 1
Esc-Mir-750 None MIR-750 CAGAUCU None None JANFOI010001418.1 48174 48255 - Protostomia Protostomia No 1
Esc-Mir-1984 None MIR-1984 GCCCUAU None None JANFOI010000054.1 88528 88590 - Conchifera Conchifera No 1
Esc-Mir-1992 None MIR-1992 CAGCAGU None None CM044512.1 55046642 55046704 + Platytrochozoa Platytrochozoa No 1
Esc-Mir-1993 None MIR-1993 AUUAUGC None None CM044503.1 75987799 75987855 - Protostomia Protostomia No 1
Esc-Mir-1994-P1 None MIR-1994 GAGACAG None None CM044488.1 115526630 115526692 - Mollusca Lophotrochozoa Unknown
Esc-Mir-1994-P2 None MIR-1994 GAGACAG None None CM044488.1 115520475 115520533 - Mollusca Lophotrochozoa No
Esc-Mir-2722 None MIR-2722 GGCGCCG None None CM044506.1 32769528 32769585 - Mollusca Mollusca No 1 1
Esc-Mir-12498 None MIR-12498 GGGGAUG None None CM044513.1 85414168 85414228 - Cephalopoda Cephalopoda No
Esc-Mir-12499 None MIR-12499 ACACCCG None None CM044518.1 1547139 1547197 - Cephalopoda Cephalopoda Unknown
Esc-Mir-12500 V None MIR-12500 UGUCGGC None None CM044511.1 75311421 75311481 + Cephalopoda Cephalopoda 3 No 1
Esc-Mir-12501 None MIR-12501 CGGUCAU None None CM044513.1 73417788 73417845 - Cephalopoda Cephalopoda No 1
Esc-Mir-12502 None MIR-12502 GUUCCUA None None CM044494.1 61429661 61429720 - Cephalopoda Cephalopoda No 1
Esc-Mir-12503 None MIR-12503 GAACCAU None None CM044514.1 30736662 30736722 + Cephalopoda Cephalopoda No
Esc-Mir-12504 None MIR-12504 UUGCUAU None None CM044525.1 58933232 58933290 + Cephalopoda Cephalopoda No 1
Esc-Mir-12505 None MIR-12505 GGAACAU None None CM044516.1 23092859 23092916 - Cephalopoda Cephalopoda No 1
Esc-Mir-12506-P1 V None MIR-12506 AGGAUCU None None CM044502.1 98531718 98531781 + E. scolopes Cephalopoda 2 No 1
Esc-Mir-12506-P2 V None MIR-12506 AGGAUCU None None CM044502.1 98745904 98745967 - E. scolopes Cephalopoda 2 No 1
Esc-Mir-12507 None MIR-12507 UGGCGGA None None CM044506.1 69015405 69015465 + Cephalopoda Cephalopoda No
Esc-Mir-12509 None MIR-12509 UUGGCAU None None CM044498.1 80598047 80598103 - Cephalopoda Cephalopoda No
Esc-Mir-12510 None MIR-12510 UAGCUGU None None CM044510.1 94470228 94470283 - Coleoidea Coleoidea No 1
Esc-Mir-12511 None MIR-12511 CCACGGU None None CM044489.1 66981733 66981795 - Coleoidea Coleoidea No 1
Esc-Mir-12512 None MIR-12512 CCGCUGU None None CM044525.1 37420478 37420535 + Coleoidea Coleoidea No 1
Esc-Mir-12513 None MIR-12513 CCGAUUG None None CM044500.1 14687259 14687313 + Coleoidea Coleoidea Unknown
Esc-Mir-12514 V None MIR-12514 AAAGGGU None None CM044524.1 57511940 57511997 - Coleoidea Coleoidea 2 No 1
Esc-Mir-12515 None MIR-12515 AGAUUCG None None CM044492.1 48651072 48651129 + Coleoidea Coleoidea No 1
Esc-Mir-12516 None MIR-12516 GUCUGUG None None CM044509.1 89863280 89863338 - Coleoidea Coleoidea No 1
Esc-Mir-12517 None MIR-12517 UCGGGAG None None CM044529.1 37490159 37490216 + Coleoidea Coleoidea No
Esc-Mir-12518 None MIR-12518 AUUAGAA None None JANFOI010000798.1 15391 15447 + Coleoidea Coleoidea No 1 1
Esc-Mir-12519 V None MIR-12519 UUUCUGU None None JANFOI010000773.1 101501 101559 + Coleoidea Coleoidea 2 No 1
Esc-Mir-12520 None MIR-12520 CCUUGAU None None JANFOI010000938.1 71483 71538 + Coleoidea Coleoidea No 1
Esc-Mir-12521 V None MIR-12521 UUAGUGC None None CM044504.1 9722094 9722155 - Coleoidea Coleoidea 3 No 1 1
Esc-Mir-12522 V None MIR-12522 UCGUGUA None None CM044504.1 81155178 81155237 - Coleoidea Coleoidea 2 No 1
Esc-Mir-12523 None MIR-12523 GUGGCAU None None CM044490.1 24342943 24343002 - Coleoidea Coleoidea Unknown
Esc-Mir-12524 None MIR-12524 CAUCCAC None None CM044491.1 147545591 147545657 + Coleoidea Coleoidea No 1 1
Esc-Mir-12525 None MIR-12525 GACAUAA None None CM044525.1 2505837 2505898 - Coleoidea Coleoidea No 1
Esc-Mir-12526 V None MIR-12526 UUCCCGC None None CM044528.1 25131789 25131849 - Coleoidea Coleoidea 2 No 1
Esc-Mir-12527 None MIR-12527 GAACCAA None None JANFOI010000077.1 47434 47490 - Coleoidea Coleoidea No 1
Esc-Mir-12528 None MIR-12528 ACGUGUC None None CM044494.1 25941751 25941815 - Coleoidea Coleoidea Unknown 1 1
Esc-Mir-12529 None MIR-12529 UGUUGAC None None CM044489.1 112609561 112609621 + Coleoidea Coleoidea No
Esc-Mir-12530 None MIR-12530 GAAGAGA None None CM044509.1 56699373 56699444 - Coleoidea Coleoidea No 1
Esc-Mir-12531 None MIR-12531 GACGAGC None None CM044511.1 13949539 13949600 - Coleoidea Coleoidea No 1
Esc-Mir-12532 V None MIR-12532 CCGCGAU None None CM044491.1 95688729 95688785 - Coleoidea Coleoidea 3 No
Esc-Mir-12533 None MIR-12533 UUUUCCA None None CM044513.1 25328369 25328430 + Coleoidea Coleoidea No 1
Esc-Mir-12535 V None MIR-12535 UCAUCAU None None CM044494.1 144397409 144397469 + Coleoidea Coleoidea 2 No 1
Esc-Mir-12536 None MIR-12536 GCCUUGC None None CM044499.1 109586789 109586849 + Coleoidea Coleoidea No 1 1
Esc-Mir-12537 None MIR-12537 UAAACCC None None CM044488.1 78016266 78016326 - Coleoidea Coleoidea No 1
Esc-Mir-12538 None MIR-12538 UCCGGAG None None CM044509.1 87082300 87082356 - Coleoidea Coleoidea No 1
Esc-Mir-12539 None MIR-12539 CUGUGCA None None CM044508.1 102297499 102297571 + Coleoidea Coleoidea No 1
Esc-Mir-12540 V None MIR-12540 AUCAAGA None None CM044527.1 52798028 52798088 + Coleoidea Coleoidea 2 Yes 1
Esc-Mir-12541 None MIR-12541 UCGGCUC None None CM044490.1 154134208 154134271 - Coleoidea Coleoidea No 1
Esc-Mir-12542 None MIR-12542 GCUGGAA None None CM044509.1 29241249 29241307 - Coleoidea Coleoidea No 1 1
Esc-Mir-12543 None MIR-12543 CUCCAAC None None CM044487.1 152590322 152590382 + Coleoidea Coleoidea Yes
Esc-Mir-12544 None MIR-12544 ACGCGUU None None CM044514.1 68853463 68853521 + Coleoidea Coleoidea No 1
Esc-Mir-12545 None MIR-12545 GCAAAGG None None CM044501.1 90956317 90956374 + Coleoidea Coleoidea No
Esc-Mir-12546 None MIR-12546 CCCUAGA None None CM044488.1 16087081 16087142 + Coleoidea Coleoidea No 1
Esc-Mir-12547 None MIR-12547 GUCUCAU None None CM044523.1 42734362 42734419 + Coleoidea Coleoidea No 1
Esc-Mir-12548 None MIR-12548 CCCUGCC None None CM044492.1 86585181 86585240 - Coleoidea Coleoidea No 1
Esc-Mir-12549 None MIR-12549 UUUCCCG None None CM044493.1 8001234 8001296 + Coleoidea Coleoidea Unknown 1 1
Esc-Mir-12550 None MIR-12550 GAUCGGU None None CM044505.1 90312667 90312727 - Coleoidea Coleoidea Unknown 1
Esc-Mir-12551 None MIR-12551 GCUAGCA None None CM044515.1 86120138 86120194 - Coleoidea Coleoidea No 1 1
Esc-Mir-12552 None MIR-12552 AAAAUUC None None CM044509.1 94709585 94709641 - Coleoidea Coleoidea No
Esc-Novel-1 None ESC-NOVEL-1 UUAAUAU None None CM044494.1 130572800 130572856 + E. scolopes E. scolopes No 1
Esc-Novel-2 None ESC-NOVEL-2 GAUUAUA None None CM044520.1 12754855 12754918 + E. scolopes E. scolopes No
Esc-Novel-3 None ESC-NOVEL-3 AGUCUGC None None CM044496.1 66728856 66728914 - E. scolopes E. scolopes No
Esc-Novel-4 V None ESC-NOVEL-4 UGGACAC None None CM044490.1 74234103 74234165 - E. scolopes E. scolopes 2 No
Esc-Novel-5 None ESC-NOVEL-5 CCGCGAU None None CM044502.1 116437927 116437985 - E. scolopes E. scolopes No 1
Esc-Novel-6 None ESC-NOVEL-6 CGCGAAC None None CM044491.1 90175633 90175693 - E. scolopes E. scolopes No 1
Esc-Novel-7 None ESC-NOVEL-7 UGAGCCC None None CM044512.1 6748236 6748295 + E. scolopes E. scolopes No 1
Esc-Novel-8 None ESC-NOVEL-8 UCCAGAU None None CM044510.1 53988920 53988979 + E. scolopes E. scolopes No 1
Esc-Novel-9 None ESC-NOVEL-9 UUCUCGU None None CM044497.1 101056710 101056767 + E. scolopes E. scolopes No
Esc-Novel-10 None ESC-NOVEL-10 GUUGGAC None None CM044508.1 64196621 64196674 + E. scolopes E. scolopes No 1
Esc-Novel-11 None ESC-NOVEL-11 AAAUGCG None None CM044513.1 62959335 62959396 + E. scolopes E. scolopes No 1
Esc-Novel-12 None ESC-NOVEL-12 GAAGUAA None None CM044507.1 99045846 99045902 - E. scolopes E. scolopes No
Esc-Novel-13 None ESC-NOVEL-13 GCCCUAU None None CM044510.1 21093044 21093104 + E. scolopes E. scolopes No 1 1
Esc-Novel-14 None ESC-NOVEL-14 AUCUCGA None None CM044514.1 53759621 53759676 + E. scolopes E. scolopes No 1 1
Esc-Novel-15 None ESC-NOVEL-15 GAACGUU None None CM044498.1 124534653 124534708 - E. scolopes E. scolopes No 1
Esc-Novel-16 None ESC-NOVEL-16 GCGAACA None None CM044506.1 21756355 21756416 - E. scolopes E. scolopes No

(red - mature/co-mature, blue - star)

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix