| MirGeneDB ID | Esc-Mir-12526 |
|---|---|
| Family name | MIR-12526 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Obi-Mir-12526-v1 Ovu-Mir-12526-v1 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044528.1: 25131789-25131849 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12526-v1) |
Mir-12526-v1
CM044528.1: 25131789-25131849 [-]
Ensembl
Mir-12526-v2 CM044528.1: 25131790-25131848 [-] Ensembl |
| Variant | Esc-Mir-12526-v1 |
| Seed | UUCCCGC |
| Precursor (pre-Mir +30nt flank) |
AUGUUUGACGAAAUCAAAUAGCUUGGCAGGGAGGCUUUUUCGGAAGGGGAAAAAUUUGAAAGUUUCUUUUUUCCCGCCGAAAAAGCCUGCCGGCCGGGGCUACUCUACCACCUUCUUCAACGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUGUUUGACGAAAUCAAA- -| A G AA AUUUGA UAG CUUGGC GG AGGCUUUUUCGG GGGGAAAA A AUC GGGCCG CC UCCGAAAAAGCC CCCUUUUU A CAACUUCUUCCACCAUCUC G^ G G G- UCUUUG . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12526-v1_5p* |
| mirBase accession | None |
| Sequence |
0- GAGGCUUUUUCGGAAGGGGAAAA -23
Get sequence
|
| Mature sequence | Esc-Mir-12526-v1_3p |
| mirBase accession | None |
| Sequence |
39- UUUCCCGCCGAAAAAGCCUGCC -61
Get sequence
|
| Variant | Esc-Mir-12526-v2 |
| Seed | UUUCCCG |
| Precursor (pre-Mir +30nt flank) |
UGUUUGACGAAAUCAAAUAGCUUGGCAGGGAGGCUUUUUCGGAAGGGGAAAAAUUUGAAAGUUUCUUUUUUCCCGCCGAAAAAGCCUGCCGGCCGGGGCUACUCUACCACCUUCUUCAAGet precursor sequence |
| Structure | 10 20 30 40 50 UGUUUGACGAAAUCAAA- -| A G AA UUUGA UAG CUUGGC GG AGGCUUUUUCGG GGGGAAAAA A AUC GGGCCG CC UCCGAAAAAGCC CCCUUUUUU A AACUUCUUCCACCAUCUC G^ G G G- CUUUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12526-v2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGCUUUUUCGGAAGGGGAAAAA -23
Get sequence
|
| Mature sequence | Esc-Mir-12526-v2_3p |
| mirBase accession | None |
| Sequence |
37- UUUUCCCGCCGAAAAAGCCUGC -59
Get sequence
|
