| MirGeneDB ID | Esc-Mir-87-o6 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Gsp-Mir-87
Obi-Mir-87-o6
Ovu-Mir-87-o6
Sne-Mir-87
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(esc-GCA_024364805.1_ASM2436480v1) |
CM044525.1: 54031820-54031880 [-]
Ensembl
|
|---|
| Seed |
UGAGCAA |
|---|
Precursor
(pre-Mir +30nt flank) |
AAAUUUAUUUCUAAUUUUGACUGGUCAGCCCGGCCUGAAAUUUUGUCUCGAACCUCUCCAGUCCAGAAGGUGAGCAAAGUUUCAGGUGUAGCUGACCAGACAAUUUUCAGCUGAUGUUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAAUUUAUUUCUAAUUU--| A CCG U GA CUCCA
UG CUGGUCAGC GCCUGAAAUUUUG CUC ACCU G
AC GACCAGUCG UGGACUUUGAAAC GAG UGGA U
ACUUUGUAGUCGACUUUUA^ A AUG - -- AGACC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear whether this is a descendant of the original Mir-87-P1 or -P2 gene. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Mir-87-o6_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGCCUGAAAUUUUGUCUCGAACCU -25
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-87-o6_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUGAGCAAAGUUUCAGGUGUAG -61
Get sequence
|
|---|
