| MirGeneDB ID | Ovu-Mir-87-o6 |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Mir-87-o6
Gsp-Mir-87
Obi-Mir-87-o6
Sne-Mir-87
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01053711.1: 39863-39923 [-]
Ensembl
|
|---|
| Seed |
UGAGCAA |
|---|
Precursor
(pre-Mir +30nt flank) |
UAUAGAAAUAUGAAUUCUGGUCUGUCAGUCCGGCCUGAAAUUUUGACUCUGACCUCUUCAUAAAAGAAGGUGAGCAAAGUUUCAGGUGUAGUUGAUGGCCCAAAAAAUCAUCCUUUCUAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAUAGAAAUAUGAAUUC--| U UCCG A UG CUUCA
UGG CUGUCAG GCCUGAAAUUUUG CUC ACCU U
ACC GGUAGUU UGGACUUUGAAAC GAG UGGA A
UUAUCUUUCCUACUAAAAA^ C GAUG - -- AGAAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear whether this is a descendant of the original Mir-87-P1 or -P2 gene. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Ovu-Mir-87-o6_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGCCUGAAAUUUUGACUCUGACCU -25
Get sequence
|
|---|
| Mature sequence |
Ovu-Mir-87-o6_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUGAGCAAAGUUUCAGGUGUAG -61
Get sequence
|
|---|
