| MirGeneDB ID | Esc-Novel-5 |
|---|
| Family name |
CEP-NOVEL-5 (all species) |
|---|
| Seed |
GUUCCUA |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Npo-Novel-5
Obi-Novel-5
Ovu-Novel-5
|
|---|
| Node of Origin (locus) |
Cephalopoda
|
|---|
| Node of Origin (family) |
Cephalopoda
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-5_pre_SRIE01025906.1:3068666-3068925: 101-160 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUGACACGAUGCAAAGAACUUUGUUACCGUAUUCGGUCCUUUUUGGGACCUCCUUUUACAUUCACAGAAGUUCCUAGAUGGACUGAGAAUGGUAGCAGGGUAUUAUCACCAUGGAGAAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGACACGAUGCAAAGA--| A U U C CUUUUA
ACUUUGUUACCGU UUCGGUCC UUU GGGAC UC C
UGGGACGAUGGUA GAGUCAGG AGA CCUUG AG A
UUAAGAGGUACCACUAUUA^ A U U A ACACUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-5_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUUCGGUCCUUUUUGGGACCUC -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
38- AGUUCCUAGAUGGACUGAGAAU -60
Get sequence
|
|---|
