| MirGeneDB ID | Esc-Novel-1 |
|---|
| Family name |
ESC-NOVEL-1 (all species) |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
|---|
Genome context
(esc-GCA_024364805.1_ASM2436480v1) |
CM044494.1: 130572800-130572856 [+]
Ensembl
|
|---|
| Seed |
UUAAUAU |
|---|
Precursor
(pre-Mir +30nt flank) |
UUCCAGACAAAAAGGAAUUUAGCUAGUUUUGUUAAUAUUUCACUGUCUGUUGUCAAGGUGAUAUGAAUAGACAUCGAAAUAUUUACAAAAUCUACUAAACAUUACUGCAUGGUAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCCAGACAAAAAGGAA-| C - U AC GUCAAG
UUUAG UAG UUUUGU AAUAUUUC UGUCUGUU G
AAAUC AUC AAAACA UUAUAAAG ACAGAUAA U
CUAAUGGUACGUCAUUAC^ - U U CU GUAUAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| Comment | There is a second Drosha cut +1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GUUAAUAUUUCACUGUCUGUU -21
Get sequence
|
|---|
| Co-mature sequence |
Esc-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UAGACAUCGAAAUAUUUACA -57
Get sequence
|
|---|
