MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-16

Family name COL-NOVEL-16 (all species)
Seed CCGAUUG
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-16-v1  Obi-Novel-16-v2  Ovu-Novel-16-v1  Ovu-Novel-16-v2 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-16_pre_SRIE01010247.1:1917746-1918000: 101-155 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCGCCCCCUACAGUUCACGGCCUAACACUUUCCGAUUGUUCUCAGUCCGACUCUGAGUUAAUAGUCGCACUUGAAAAAUCGGUGUGUGUGAACCGACCAAAACGCAUGUGAAGAA
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Structure
        10           20        30        40        50       
GCGCCCCCUACAGUUCA---|  CCUA    UUU      G   UC   C     CUGA 
                    CGG    ACAC   CCGAUU UUC  AGU CGACU    G
                    GCC    UGUG   GGCUAA AAG  UCA GCUGA    U
AAGAAGUGUACGCAAAACCA^  AAG-    UGU      A   U-   C     UAAU 
   110       100        90         80         70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-16_5p

mirBase accessionNone
Sequence
0- UCCGAUUGUUCUCAGUCCGACU -22
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Star sequence

Esc-Novel-16_3p*

mirBase accessionNone
Sequence
34- UCGCACUUGAAAAAUCGGUGU -55
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