| MirGeneDB ID | Esc-Novel-15 |
|---|
| Family name |
ESC-NOVEL-15 (all species) |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
|---|
Genome context
(esc-GCA_024364805.1_ASM2436480v1) |
CM044498.1: 124534653-124534708 [-]
Ensembl
|
|---|
| Seed |
GAACGUU |
|---|
Precursor
(pre-Mir +30nt flank) |
CACCAGAAUCAACAACGCGUGGUGACUGACCGUUUCUUCCCUUGCGUUCAUAAGACCAGUAAGAUGAACGUUAGGCGAGACACCGUGAGUCACCAUCUCCGAUCUACAUACGCUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACCAGAAUCAACAACGC--| G C U C U AAGAC
GUGGUGACU AC GU UCUU CCU GCGUUCAU C
UACCACUGA UG CA AGAG GGA UGCAAGUA A
UUUCGCAUACAUCUAGCCUC^ G C C C U GAAUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-15_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGUUUCUUCCCUUGCGUUCAU -21
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-15_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UGAACGUUAGGCGAGACACCGU -56
Get sequence
|
|---|
