| MirGeneDB ID | Esc-Novel-15 |
|---|
| Family name |
COL-NOVEL-15 (all species) |
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| Seed |
CCGCUGU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Obi-Novel-15
Ovu-Novel-15
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-15_pre_SRIE01007950.1:5228425-5228682: 101-158 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUAAGUGUUGUAAGUUUUGACAAAGGCGGAGGUUAACCGGAUAAGCGUCCUGUUGUCUUGAAAAGACCGCUGUUCCAGUUCAUCUUCGUCUAACCUCAAUGAACCACACGUCAGAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGUAAGUGUUGUAAGUU- CAA-| U C UA UC GUUGU
UUGA AGGCGGAGGU AAC GGA AGCG CU C
AACU UCUGCUUCUA UUG CCU UCGC GA U
AUAGACUGCACACCAAGU CCAA^ C A UG CA AAAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Star sequence |
Esc-Novel-15_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUUAACCGGAUAAGCGUCCU -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-15_3p |
| mirBase accession | None |
|---|
| Sequence |
36- ACCGCUGUUCCAGUUCAUCUUC -58
Get sequence
|
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