MirGeneDB 3.0
MirGeneDB ID

Esc-Mir-210-P15

Family name MIR-210 (all species)
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Mir-210-P16 
Orthologues Aca-Mir-210  Agr-Mir-210  Ami-Mir-210  Bfl-Mir-210  Bla-Mir-210  Bta-Mir-210  Cfa-Mir-210  Cja-Mir-210  Cli-Mir-210  Cmi-Mir-210  Cpi-Mir-210  Cpo-Mir-210  Dgr-Mir-210  Dma-Mir-210  Dno-Mir-210  Dpu-Mir-210  Dre-Mir-210  Eba-Mir-210  Ebu-Mir-210  Eca-Mir-210  Egr-Mir-210  Ete-Mir-210  Gga-Mir-210  Gja-Mir-210  Gmo-Mir-210  Hsa-Mir-210  Isc-Mir-210  Lan-Mir-210  Lch-Mir-210  Lgi-Mir-210  Lhy-Mir-210  Llo-Mir-210  Loc-Mir-210  Mal-Mir-210  Mdo-Mir-210  Mgi-Mir-210  Mml-Mir-210  Mmr-Mir-210  Mmu-Mir-210  Mom-Mir-210  Mun-Mir-210  Neu-Mir-210  Npo-Mir-210  Oan-Mir-210  Obi-Mir-210-P15-v1  Ocu-Mir-210  Ofu-Mir-210  Ovu-Mir-210-P15-v1  Pab-Mir-210  Pau-Mir-210  Pbv-Mir-210  Pca-Mir-210  Pma-Mir-210  Rno-Mir-210  Sha-Mir-210  Sko-Mir-210  Sma-Mir-210  Snu-Mir-210  Spt-Mir-210  Tgu-Mir-210  Tni-Mir-210  War-Mir-210  Xtr-Mir-210 
Node of Origin (locus) Coleoidea
Node of Origin (family) Bilateria
Genome context
(esc-GCA_024364805.1_ASM2436480v1)		 CM044505.1: 75028088-75028142 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-210-P15-v1)		 Mir-210-P15-v2 CM044505.1: 75028087-75028143 [-] Ensembl
Mir-210-P15-v1 CM044505.1: 75028088-75028142 [-] Ensembl
Variant

Esc-Mir-210-P15-v1
Seed UUGUGCG
Precursor
(pre-Mir +30nt flank)		 
UAAGGGAGACCACUCUGUGUCUUAUGUUCGUCGCUGUCGCACGUUACUAGGAAACUCAUGGAUUCUUGUGCGUGUGACAGUGACUAUGCAUGGACAUUACAUACAACGUCCGGCG
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Structure
        10          20         30        40        50        
UAAGGGAGACCACUCUG--|    U    UC-               U  U     ACUC 
                   UGUCU AUGU   GUCGCUGUCGCACGU AC AGGAA    \
                   ACAGG UACG   CAGUGACAGUGUGCG UG UUCUU    A
GCGGCCUGCAACAUACAUU^    -    UAU               -  -     AGGU 
   110       100         90        80        70          60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Li
Star sequence

Esc-Mir-210-P15-v1_5p*
mirBase accessionNone
Sequence 
0- UCGCUGUCGCACGUUACUAGGAA -23
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Mature sequence

Esc-Mir-210-P15-v1_3p
mirBase accessionNone
Sequence 
34- CUUGUGCGUGUGACAGUGACU -55
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Variant

Esc-Mir-210-P15-v2
Seed UGUGCGU
Precursor
(pre-Mir +30nt flank)		 
CUAAGGGAGACCACUCUGUGUCUUAUGUUCGUCGCUGUCGCACGUUACUAGGAAACUCAUGGAUUCUUGUGCGUGUGACAGUGACUAUGCAUGGACAUUACAUACAACGUCCGGCGA
Get precursor sequence
Structure
        10          20        30         40        50        
CUAAGGGAGACCACUCU--|     U    UC-               U  U    AACU 
                   GUGUCU AUGU   GUCGCUGUCGCACGU AC AGGA    C
                   UACAGG UACG   CAGUGACAGUGUGCG UG UCUU    A
AGCGGCCUGCAACAUACAU^     -    UAU               -  U    AGGU 
     110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Li
Star sequence

Esc-Mir-210-P15-v2_5p*
mirBase accessionNone
Sequence 
0- GUCGCUGUCGCACGUUACUAGGA -23
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Mature sequence

Esc-Mir-210-P15-v2_3p
mirBase accessionNone
Sequence 
36- UUGUGCGUGUGACAGUGACUA -57
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