MirGeneDB ID | Esc-Mir-1993 |
Family name |
MIR-1993 (all species) |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-1993
Ava-Mir-1993-P10
Ava-Mir-1993-P11
Bko-Mir-1993
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Csc-Mir-1993
Cte-Mir-1993
Dgr-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Eba-Mir-1993
Efe-Mir-1993-P1
Efe-Mir-1993-P2
Egr-Mir-1993
Gsa-Mir-1993
Gsp-Mir-1993
Hru-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Llo-Mir-1993
Lpo-Mir-1993-P3
Lpo-Mir-1993-P4
Lpo-Mir-1993-P5
Mgi-Mir-1993
Mom-Mir-1993
Npo-Mir-1993
Obi-Mir-1993
Ofu-Mir-1993-P12
Ofu-Mir-1993-P13
Ovu-Mir-1993
Pau-Mir-1993
Pca-Mir-1993
Pcr-Mir-1993-P14
Pcr-Mir-1993-P15
Pdu-Mir-1993
Pve-Mir-1993-P8
Pve-Mir-1993-P9
Rph-Mir-1993
Sma-Mir-1993
Sme-Mir-1993-P6
Sme-Mir-1993-P7
Snu-Mir-1993
Tur-Mir-1993
War-Mir-1993
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044503.1: 75987799-75987855 [-]
Ensembl
|
Seed |
AUUAUGC |
Precursor (pre-Mir +30nt flank) |
AGUCGAGAAACCCUAUGACUUUUGACAUUUUCGGGAAUAGCGGCAUAAUGCUGUAAUUUCGAUCGUAUUAUGCUGUUAUUCACGAGAUAACCCAGUCAGUUGCCUCGAAGAUGACCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUCGAGAAACCCUAUGACUU AU-----| G UGUAAU
UUGAC UUUCG GAAUAGCGGCAUAAUGC \
GACUG AGAGC CUUAUUGUCGUAUUAUG U
ACCAGUAGAAGCUCCGUU--- ACCCAAU^ A CUAGCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -2 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Mir-1993_5p* |
mirBase accession | None |
Sequence |
0- UCGGGAAUAGCGGCAUAAUGCU -22
Get sequence
|
Mature sequence |
Esc-Mir-1993_3p |
mirBase accession | None |
Sequence |
35- UAUUAUGCUGUUAUUCACGAGA -57
Get sequence
|