MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-1993

Family name MIR-1993 (all species)
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000302.1: 434878-434936 [-] Ensembl
Seed AUUAUGC
Precursor
(pre-Mir +30nt flank)		 
AGUAAGAGUCAAACUUGUCUUGGUUUUAUUUCGGGAAUAGUAGCCAUAAUGCCGUGUUUUGUUCUGGUAUUAUGCUGCUAUUCACGAAGUCGUCCGGGACACAUCAACGCCUAGAAAGU
Get precursor sequence
Structure
        10           20        30        40        50         
AGUAAGAGUCAAACUUG---|     UUUU      G          C        GUGUU 
                    UCUUGG    AUUUCG GAAUAGUAGC AUAAUGCC     U
                    AGGGCC    UGAAGC CUUAUCGUCG UAUUAUGG     U
UGAAAGAUCCGCAACUACAC^     UGC-      A          -        UCUUG 
       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Pau-Mir-1993_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCGGGAAUAGUAGCCAUAAUGCC -23
Get sequence
Mature sequence

Pau-Mir-1993_3p
mirBase accessionNone
Sequence 
37- UAUUAUGCUGCUAUUCACGAAG -59
Get sequence