MirGeneDB ID | Lpo-Mir-1993-P3 |
Family name |
MIR-1993 (all species) |
Seed |
AUUAUGC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-1993-P4
Lpo-Mir-1993-P5
|
Orthologues |
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Cgi-Mir-1993
Cte-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Esc-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Npo-Mir-1993
Obi-Mir-1993
Ovu-Mir-1993
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013669096.1: 90373-90433 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGAAUGAAAAUGAAUGCUUCAGAUUUUUUCGCGAAUGCUAGCACAAUUAUGUUAAUAACUCAGUUCAUAUUAUGCUAGUGUUCGUGGGUUAGAAUGAAGUACCAUGCUACAUGAAGAUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGAAUGAAAAUGAAU--| GA UU CAAU UUAAUA
GCUUCA UU UUCGCGAAUGCUAGCA UAUG A
UGAAGU GA GGGUGCUUGUGAUCGU AUAC C
AUAGAAGUACAUCGUACCA^ AA UU AUU- UUGACU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-1993-P3_5p* |
mirBase accession | None |
Sequence |
0- UCGCGAAUGCUAGCACAAUUAUG -23
Get sequence
|
Mature sequence |
Lpo-Mir-1993-P3_3p |
mirBase accession | None |
Sequence |
39- UAUUAUGCUAGUGUUCGUGGGU -61
Get sequence
|