MirGeneDB ID | Bpl-Mir-1993 |
Family name |
MIR-1993 (all species) |
Seed |
AUUAUGC |
Species |
Rotifer (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cbr-Mir-1993
Cel-Mir-1993
Cgi-Mir-1993
Cte-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Efe-Mir-1993-P1
Efe-Mir-1993-P2
Esc-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Lpo-Mir-1993-P3
Lpo-Mir-1993-P4
Lpo-Mir-1993-P5
Npo-Mir-1993
Obi-Mir-1993
Ovu-Mir-1993
Sme-Mir-1993-P6
Sme-Mir-1993-P7
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (Bpl_ASM1027981) |
QEOQ01000226.1: 2985299-2985369 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUCUGGGCGAUAUUAAUCAAAGAUAAAAUCUCGUGAAAUUCAGUUUGAUGUGUAGAUUUAAGAUAUCUUAUCUGUCAUAUUAUGCUGAAUUUUUCGAUUUUUUUGUCUUAAUCUAUUCAUCCGUUCCGCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUCUGGGCGAUAUUAAUCA- UC-| U U UAGAUUUAAGA
AAGAUAAAA UCG GAAAUUCAGU UGAUGUG \
UUCUGUUUU AGC UUUUAAGUCG AUUAUAC U
UCGCCUUGCCUACUUAUCUAA UUU^ U U UGUCUAUUCUA
. 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bpl-Mir-1993_5p* |
mirBase accession | None |
Sequence |
0- CUCGUGAAAUUCAGUUUGAUGUG -23
Get sequence
|
Mature sequence |
Bpl-Mir-1993_3p |
mirBase accession | None |
Sequence |
48- UAUUAUGCUGAAUUUUUCGAUUU -71
Get sequence
|