MirGeneDB ID | Dma-Mir-1993 |
Family name |
MIR-1993 (all species) |
Seed |
AUUAUGC |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Cgi-Mir-1993
Cte-Mir-1993
Dpu-Mir-1993
Efe-Mir-1993-P1
Efe-Mir-1993-P2
Esc-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Lpo-Mir-1993-P3
Lpo-Mir-1993-P4
Lpo-Mir-1993-P5
Npo-Mir-1993
Obi-Mir-1993
Ovu-Mir-1993
Sme-Mir-1993-P6
Sme-Mir-1993-P7
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (DMA_ASM399081) |
NC_046179.1: 2555927-2555987 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGAAAAAAAUGAAUAGUGACUUUGUACUUUCGUGAAUCUUAGCGUAAUGUCGUUCAUUUGACUCGGGAUAUUAUGCUAAGAUAAACGUGAGCUCCAGAGUCACCUUCGCCACGAACGCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGAAAAAAAUGAAUAG- UA-| U GA GUUCAUU
UGACUUUG CUU CGU AUCUUAGCGUAAUGUC \
ACUGAGAC GAG GCA UAGAAUCGUAUUAUAG U
GACGCAAGCACCGCUUCC CUC^ U AA GGCUCAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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03 |
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14 |
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Star sequence |
Dma-Mir-1993_5p* |
mirBase accession | None |
Sequence |
0- UCGUGAAUCUUAGCGUAAUGUC -22
Get sequence
|
Mature sequence |
Dma-Mir-1993_3p |
mirBase accession | None |
Sequence |
39- UAUUAUGCUAAGAUAAACGUGA -61
Get sequence
|