MirGeneDB 2.1
MirGeneDB ID

Dpu-Mir-1993

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Cgi-Mir-1993  Cte-Mir-1993  Dma-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Esc-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_21: 1050964-1051024 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUAAAUUUUUAAAAAGUGACUUUGUACUUUCGUGAAUCUUAGCGUAAUGUCGUUCAUUUGACUCGGGAUAUUAUGCUAAGAUAAACGUGAGCUCCAGAGUCACCUUCGCCACGUCUAUAA
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Structure
        10         20         30        40        50          
UCUAAAUUUUUAAAAAG-        UA-|  U   GA                GUUCAUU 
                  UGACUUUG   CUU CGU  AUCUUAGCGUAAUGUC       \
                  ACUGAGAC   GAG GCA  UAGAAUCGUAUUAUAG       U
AAUAUCUGCACCGCUUCC        CUC^  U   AA                GGCUCAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Dpu-Mir-1993_5p*
mirBase accessionNone
Sequence 
0- UCGUGAAUCUUAGCGUAAUGUC -22
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Mature sequence

Dpu-Mir-1993_3p
mirBase accessionNone
Sequence 
39- UAUUAUGCUAAGAUAAACGUGA -61
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