Mir-1993-P1

MirGeneDB ID

Efe-Mir-1993-P1

Family name

MIR-1993 (all species)

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-1993-P2

Orthologues

Agr-Mir-1993 Bko-Mir-1993 Bpl-Mir-1993 Cbr-Mir-1993 Cel-Mir-1993 Csc-Mir-1993 Cte-Mir-1993 Dgr-Mir-1993 Dma-Mir-1993 Dpu-Mir-1993 Eba-Mir-1993 Egr-Mir-1993 Esc-Mir-1993 Gsa-Mir-1993 Gsp-Mir-1993 Hru-Mir-1993 Isc-Mir-1993 Lan-Mir-1993 Lgi-Mir-1993 Llo-Mir-1993 Mgi-Mir-1993 Mom-Mir-1993 Npo-Mir-1993 Obi-Mir-1993 Ovu-Mir-1993 Pau-Mir-1993 Pca-Mir-1993 Pdu-Mir-1993 Rph-Mir-1993 Sma-Mir-1993 Snu-Mir-1993 Tur-Mir-1993 War-Mir-1993

Node of Origin (locus)

E. fetida

Node of Origin (family)

Protostomia

Genome context
(Efe_combined)

Efet.01.1536008: 48-133 [-]

Seed

AUUAUGC

Precursor
(pre-Mir +30nt flank)

AUAGGCUAGUAGGUAGGGUAAAUGGGAGUUUCGGGAAUAGCUGCAGAAUGCUGUGAAUAAUAUUGCGUCCAUCGAAUAUUAUCGUAUAACCAGUAUUAUGCUGUUAUUCACCGAGACGCCCGAACGUUCAUCAUCGUCUGGUCCAC

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Structure

        10        20          30         40        50        60        70  
AUAGGCUAGUAGGUAGGGUAAA--    A       -|      U   G      GUGAAUAAUAUUGCGUCCA 
                        UGGG GUUUCGG GAAUAGC GCA AAUGCU                   \
                        GCCC CAGAGCC CUUAUUG CGU UUAUGA                   U
CACCUGGUCUGCUACUACUUGCAA    G       A^      U   A      CCAAUAUGCUAUUAUAAGC 
    140       130       120       110       100        90        80

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Efe-Mir-1993-P1_5p*

mirBase accession

None

Sequence

0- UCGGGAAUAGCUGCAGAAUGCU -22

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Mature sequence

Efe-Mir-1993-P1_3p

mirBase accession

None

Sequence

63- UAUUAUGCUGUUAUUCACCGAGA -86

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