MirGeneDB 3.0
MirGeneDB ID

Lgi-Mir-1993

Family name MIR-1993 (all species)
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-1993
Paralogues
Orthologues Agr-Mir-1993  Ava-Mir-1993-P10  Ava-Mir-1993-P11  Bko-Mir-1993  Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Csc-Mir-1993  Cte-Mir-1993  Dgr-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Eba-Mir-1993  Efe-Mir-1993-P1  Efe-Mir-1993-P2  Egr-Mir-1993  Esc-Mir-1993  Gsa-Mir-1993  Gsp-Mir-1993  Hru-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Llo-Mir-1993  Lpo-Mir-1993-P3  Lpo-Mir-1993-P4  Lpo-Mir-1993-P5  Mgi-Mir-1993  Mom-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ofu-Mir-1993-P12  Ofu-Mir-1993-P13  Ovu-Mir-1993  Pau-Mir-1993  Pca-Mir-1993  Pcr-Mir-1993-P14  Pcr-Mir-1993-P15  Pdu-Mir-1993  Pve-Mir-1993-P8  Pve-Mir-1993-P9  Rph-Mir-1993  Sma-Mir-1993  Sme-Mir-1993-P6  Sme-Mir-1993-P7  Snu-Mir-1993  Tur-Mir-1993  War-Mir-1993 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Lotgi1)		 LOTGIsca_1: 2120424-2120483 [+] Ensembl
Seed AUUAUGC
Precursor
(pre-Mir +30nt flank)		 
GUACUAUUGAAGUCAAAGUCUGAGUAUAUUUCGGGAAUAUAGGCAUAAUGCCCGUUAAUACUUGAACGUAUUAUGCUGAUAUUCACGAGAUCCGCUGGACAGAAUCAACAUUCAUUGGGA
Get precursor sequence
Structure
        10           20        30        40        50         
GUACUAUUGAAGUCAAA---|   G   AU      G      A          CCGUUAA 
                    GUCU AGU  AUUUCG GAAUAU GGCAUAAUGC       U
                    CAGG UCG  UAGAGC CUUAUA UCGUAUUAUG       A
AGGGUUACUUACAACUAAGA^   -   CC      A      G          CAAGUUC 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Lgi-Mir-1993_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCGGGAAUAUAGGCAUAAUGCC -22
Get sequence
Mature sequence

Lgi-Mir-1993_3p
mirBase accessionMIMAT0009723
Sequence 
38- UAUUAUGCUGAUAUUCACGAGA -60
Get sequence