MirGeneDB ID | Sme-Mir-1993-P6 |
Family name |
MIR-1993 (all species) |
Seed |
AUUAUGC |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-1993
|
Paralogues |
Sme-Mir-1993-P7
|
Orthologues |
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Cgi-Mir-1993
Cte-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Esc-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Npo-Mir-1993
Obi-Mir-1993
Ovu-Mir-1993
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Protostomia
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000027_dd_Smes_g4_27: 2971604-2971665 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUUUGGAAAUUAACCUUCGAUAUGUAAUUGAUGAAUCAACAGUAUAAAAACGGAGUACAACAAAUAUUCGUAUUAUGCUGUUAUUCAUGAGUUACUAUGGAUUUAUCGUCGAUUAAAAAUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUUUUGGAAAUUAACCU---| G U G C AA GGAGUACA
UC AUA GUAAUU AUGAAU AACAGUAUAA AC A
AG UAU CAUUGA UACUUA UUGUCGUAUU UG C
AUAAAAAUUAGCUGCUAUUU^ G - G - A- CUUAUAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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Star sequence |
Sme-Mir-1993-P6_5p* |
mirBase accession | MIMAT0012140 |
Sequence |
0- GAUGAAUCAACAGUAUAAAAAC -22
Get sequence
|
Mature sequence |
Sme-Mir-1993-P6_3p |
mirBase accession | MIMAT0011241 |
Sequence |
41- UAUUAUGCUGUUAUUCAUGAG -62
Get sequence
|