MirGeneDB ID | Sme-Mir-1993-P7 |
Family name |
MIR-1993 (all species) |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-2162
|
Paralogues |
Sme-Mir-1993-P6
|
Orthologues |
Agr-Mir-1993
Bko-Mir-1993
Bpl-Mir-1993
Cbr-Mir-1993
Cel-Mir-1993
Csc-Mir-1993
Cte-Mir-1993
Dgr-Mir-1993
Dma-Mir-1993
Dpu-Mir-1993
Eba-Mir-1993
Egr-Mir-1993
Esc-Mir-1993
Gsa-Mir-1993
Gsp-Mir-1993
Hru-Mir-1993
Isc-Mir-1993
Lan-Mir-1993
Lgi-Mir-1993
Llo-Mir-1993
Mgi-Mir-1993
Mom-Mir-1993
Npo-Mir-1993
Obi-Mir-1993
Ovu-Mir-1993
Pau-Mir-1993
Pca-Mir-1993
Pdu-Mir-1993
Rph-Mir-1993
Sma-Mir-1993
Snu-Mir-1993
Tur-Mir-1993
War-Mir-1993
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Protostomia
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000017_dd_Smes_g4_17: 2221561-2221616 [+]
UCSC
Ensembl
|
Seed |
AUUAUGC |
Precursor (pre-Mir +30nt flank) |
AUAAAUAAAAUGGCGUAGUCUAUGGUGUAUUGUGCUUAUUUGUAUAUUGCACUGUUAAUCUUUUGUAUUAUGCAAAUAUUCACAAUUUGACCAAGCUUAAACAUCCAUAUUUGUUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUAAAUAAAAUGGCGUAGUCUA- GU-| CU U CUGUU
UGGU AUUGUG UAUUUGUAUA UGCA A
ACCA UAACAC AUAAACGUAU AUGU A
GUUGUUUAUACCUACAAAUUCGA GUU^ UU U UUUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Sme-Mir-1993-P7_5p* |
mirBase accession | MIMAT0011256 |
Sequence |
0- UGUGCUUAUUUGUAUAUUGCA -21
Get sequence
|
Mature sequence |
Sme-Mir-1993-P7_3p |
mirBase accession | MIMAT0012153 |
Sequence |
35- UAUUAUGCAAAUAUUCACAAU -56
Get sequence
|