MirGeneDB 2.1
MirGeneDB ID

Lpo-Mir-1993-P5

Family name MIR-1993 (all species)
Seed AUUAUGC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-1993-P3  Lpo-Mir-1993-P4 
Orthologues Bpl-Mir-1993  Cbr-Mir-1993  Cel-Mir-1993  Cgi-Mir-1993  Cte-Mir-1993  Dma-Mir-1993  Dpu-Mir-1993  Esc-Mir-1993  Isc-Mir-1993  Lan-Mir-1993  Lgi-Mir-1993  Npo-Mir-1993  Obi-Mir-1993  Ovu-Mir-1993 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013668467.1: 148128-148188 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGACUCUCCCAGCUGGUGUUUCAAACUAUUUCGCGAAGGCUAGCAUAAUAAUGUUGAGGUCAUGGUUCAUAUUAUGCUGGUGUUCGUGGGUUAGAGUGAGGCUCCAAACGACCCUGAAGAU
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Structure
        10          20        30        40        50        60
CGACUCUCCCAGCUGGU--|     AA   U        G            A  UUGAGG 
                   GUUUCA  CUA UUCGCGAA GCUAGCAUAAUA UG      U
                   CGGAGU  GAU GGGUGCUU UGGUCGUAUUAU AC      C
UAGAAGUCCCAGCAAACCU^     GA   U        G            -  UUGGUA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-1993-P5_5p*
mirBase accessionNone
Sequence 
0- UCGCGAAGGCUAGCAUAAUAAUG -23
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Mature sequence

Lpo-Mir-1993-P5_3p
mirBase accessionNone
Sequence 
39- UAUUAUGCUGGUGUUCGUGGGU -61
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