Mir-1993-P5

MirGeneDB ID

Lpo-Mir-1993-P5

Family name

MIR-1993 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-1993-P3 Lpo-Mir-1993-P4

Orthologues

Agr-Mir-1993 Bko-Mir-1993 Bpl-Mir-1993 Cbr-Mir-1993 Cel-Mir-1993 Csc-Mir-1993 Cte-Mir-1993 Dgr-Mir-1993 Dma-Mir-1993 Dpu-Mir-1993 Eba-Mir-1993 Egr-Mir-1993 Esc-Mir-1993 Gsa-Mir-1993 Gsp-Mir-1993 Hru-Mir-1993 Isc-Mir-1993 Lan-Mir-1993 Lgi-Mir-1993 Llo-Mir-1993 Mgi-Mir-1993 Mom-Mir-1993 Npo-Mir-1993 Obi-Mir-1993 Ovu-Mir-1993 Pau-Mir-1993 Pca-Mir-1993 Pdu-Mir-1993 Rph-Mir-1993 Sma-Mir-1993 Snu-Mir-1993 Tur-Mir-1993 War-Mir-1993

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668467.1: 148128-148188 [+] Ensembl

Seed

AUUAUGC

Precursor
(pre-Mir +30nt flank)

CGACUCUCCCAGCUGGUGUUUCAAACUAUUUCGCGAAGGCUAGCAUAAUAAUGUUGAGGUCAUGGUUCAUAUUAUGCUGGUGUUCGUGGGUUAGAGUGAGGCUCCAAACGACCCUGAAGAU

Get precursor sequence

Structure

        10          20        30        40        50        60
CGACUCUCCCAGCUGGU--|     AA   U        G            A  UUGAGG 
                   GUUUCA  CUA UUCGCGAA GCUAGCAUAAUA UG      U
                   CGGAGU  GAU GGGUGCUU UGGUCGUAUUAU AC      C
UAGAAGUCCCAGCAAACCU^     GA   U        G            -  UUGGUA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-1993-P5_5p*

mirBase accession

None

Sequence

0- UCGCGAAGGCUAGCAUAAUAAUG -23

Get sequence

Mature sequence

Lpo-Mir-1993-P5_3p

mirBase accession

None

Sequence

39- UAUUAUGCUGGUGUUCGUGGGU -61

Get sequence