| MirGeneDB ID | Esc-Mir-12517 |
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| Family name |
MIR-12517 (all species) |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Mir-12517-P1
Obi-Mir-12517-P2
Ovu-Mir-12517-P1
Ovu-Mir-12517-P2
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(esc-GCA_024364805.1_ASM2436480v1) |
CM044529.1: 37490159-37490216 [+]
Ensembl
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| Seed |
UCGGGAG |
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Precursor
(pre-Mir +30nt flank) |
GAUAUAUGUAUAUAUAUUAGCAUGCACGCACAUCUGACUUUCCUCCCGCGCAGCAUAUAAGCGAUUCUCGGGAGACAAGUGAGAUGUCGUGCAUUUGCUGGACAUGCAUCGAAAAAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUAUAUGUAUAUAUAU- --| C G UC CGCAGCAUA
UAGCA UGCACG ACAUCU ACUU CUCCCG U
GUCGU ACGUGC UGUAGA UGAA GAGGGC A
AUAAAAAGCUACGUACAG UU^ - G CA UCUUAGCGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Esc-Mir-12517_5p* |
| mirBase accession | None |
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| Sequence |
0- CAUCUGACUUUCCUCCCGCGCA -22
Get sequence
|
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| Mature sequence |
Esc-Mir-12517_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CUCGGGAGACAAGUGAGAUGUC -58
Get sequence
|
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