| MirGeneDB ID | Esc-Mir-12522 |
|---|---|
| Family name | MIR-12522 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Obi-Mir-12522-v1 Ovu-Mir-12522-v1 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044504.1: 81155178-81155237 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12522-v1) |
Mir-12522-v1
CM044504.1: 81155178-81155237 [-]
Ensembl
Mir-12522-v2 CM044504.1: 81155179-81155236 [-] Ensembl |
| Variant | Esc-Mir-12522-v1 |
| Seed | UCGUGUA |
| Precursor (pre-Mir +30nt flank) |
GCACGUUCAUUUUGAAUCGGUCUAACGUAACUCGUGUAACAGUUCUGAAGCCUGGAACAUUUGACGAGGUUUAAGACUGUCCCACGGGCUAAGUGAGGCUUGCAAACAUCAUGAUUUUUUGet precursor sequence |
| Structure | 10 20 30 40 50 GCACGUUCAUUUUGAAUC--| A G A UA U G UGGAACA GGUCU AC UA CUCGUG ACAGU CU AAGCC \ UCGGA UG AU GGGCAC UGUCA GA UUUGG U UUUUUUAGUACUACAAACGU^ G A C CC - A AGCAGUU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Esc-Mir-12522-v1_5p |
| mirBase accession | None |
| Sequence |
0- CUCGUGUAACAGUUCUGAAGCC -22
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|
| Co-mature sequence | Esc-Mir-12522-v1_3p |
| mirBase accession | None |
| Sequence |
39- UUUAAGACUGUCCCACGGGCU -60
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|
| Variant | Esc-Mir-12522-v2 |
| Seed | UUUAAGA |
| Precursor (pre-Mir +30nt flank) |
CACGUUCAUUUUGAAUCGGUCUAACGUAACUCGUGUAACAGUUCUGAAGCCUGGAACAUUUGACGAGGUUUAAGACUGUCCCACGGGCUAAGUGAGGCUUGCAAACAUCAUGAUUUUUGet precursor sequence |
| Structure | 10 20 30 40 50 CACGUUCAUUUUGAAUC--| A G A UA U G GGAACA GGUCU AC UA CUCGUG ACAGU CU AAGCCU \ UCGGA UG AU GGGCAC UGUCA GA UUUGGA U UUUUUAGUACUACAAACGU^ G A C CC - A GCAGUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12522-v2_5p* |
| mirBase accession | None |
| Sequence |
0- UCGUGUAACAGUUCUGAAGCCU -22
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|
| Mature sequence | Esc-Mir-12522-v2_3p |
| mirBase accession | None |
| Sequence |
37- GUUUAAGACUGUCCCACGGGC -58
Get sequence
|
