| MirGeneDB ID | Esc-Novel-14 |
|---|
| Family name |
ESC-NOVEL-14 (all species) |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
|---|
Genome context
(esc-GCA_024364805.1_ASM2436480v1) |
CM044514.1: 53759621-53759676 [+]
Ensembl
|
|---|
| Seed |
AUCUCGA |
|---|
Precursor
(pre-Mir +30nt flank) |
UUAUAUUCCAUACUUUUGAGUCUUACACCUGAUCUCGAUGAGGUUUGAUCCAUAGGAUCCAUAGGAUCGGACCACGUCGAGAGCAAGUGUGAGAUGUUGCCCACAUCGAGAGCAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUAUAUUCCAUACUUUUGA--| C A A AUAGG
GUCUUACAC UG UCUCGAUG GGUUUGAUCC A
UAGAGUGUG AC AGAGCUGC CCAGGCUAGG U
GGACGAGAGCUACACCCGUUG^ A G A AUACC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-14_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GAUCUCGAUGAGGUUUGAUCC -21
Get sequence
|
|---|
| Co-mature sequence |
Esc-Novel-14_3p |
| mirBase accession | None |
|---|
| Sequence |
35- AUCGGACCACGUCGAGAGCAA -56
Get sequence
|
|---|
