| MirGeneDB ID | Esc-Novel-2 |
|---|
| Family name |
ESC-NOVEL-2 (all species) |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
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Genome context
(esc-GCA_024364805.1_ASM2436480v1) |
CM044520.1: 12754855-12754918 [+]
Ensembl
|
|---|
| Seed |
GAUUAUA |
|---|
Precursor
(pre-Mir +30nt flank) |
UGAGAUCCAGUCUGUGGUUCCAUCUGGAAAUGAUUAUAGUUAACGGCCCGAGCGAUUGAUUUCUCUGAUUCUUGGGCCCUAAACUACAAUUGUGUCCGGACAGAAAACUCGCAUACACAGCAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGAGAUCCAGUCUGUGG--| CA A UG A AAC CGAUUGAU
UUC UCUGGA A AUU UAGUU GGCCCGAG U
AAG AGGCCU U UAA AUCAA CCGGGUUC U
GUACGACACAUACGCUCAA^ AC G GU C AUC UUAGUCUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| Comment | There is a second Dicer cut +1 on the 3p arm. |
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| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAUUAUAGUUAACGGCCCGAG -22
Get sequence
|
|---|
| Star sequence |
Esc-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- UGGGCCCUAAACUACAAUUGUG -64
Get sequence
|
|---|
