| MirGeneDB ID | Esc-Mir-12540 |
|---|---|
| Family name | MIR-12540 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Obi-Mir-12540 Ovu-Mir-12540 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044527.1: 52798028-52798088 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12540-v1) |
Mir-12540-v1
CM044527.1: 52798028-52798088 [+]
Ensembl
Mir-12540-v2 CM044527.1: 52798028-52798088 [+] Ensembl |
| Variant | Esc-Mir-12540-v1 |
| Seed | AUCAAGA |
| Precursor (pre-Mir +30nt flank) |
UUGUUCCUUUUAUUACAAUGUUGUGGGAGACCUUCAGCAUGGCCUUUGACAGUUUACACGACACUUCGCUAUCAAGACCAUGGUGAGAGUCUGCCGUAACACAGUACUCAACUGGUCAUAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUGUUCCUUUUAUUACAA--| G C G CC C UUACAC UGUUGUGG AGAC UUCA CAUGG UUUGA AGU G ACAAUGCC UCUG GAGU GUACC GAACU UCG A UAUACUGGUCAACUCAUGAC^ G A G A- A CUUCAC . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | Although the 3' uridine is templated this give a three 3-nt offset. |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12540-v1_5p* |
| mirBase accession | None |
| Sequence |
0- CCUUCAGCAUGGCCUUUGACAGU -23
Get sequence
|
| Mature sequence | Esc-Mir-12540-v1_3p |
| mirBase accession | None |
| Sequence |
39- UAUCAAGACCAUGGUGAGAGUC -61
Get sequence
|
| Variant | Esc-Mir-12540-v2 |
| Seed | UCAAGAC |
| Precursor (pre-Mir +30nt flank) |
UUGUUCCUUUUAUUACAAUGUUGUGGGAGACCUUCAGCAUGGCCUUUGACAGUUUACACGACACUUCGCUAUCAAGACCAUGGUGAGAGUCUGCCGUAACACAGUACUCAACUGGUCAUAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUGUUCCUUUUAUUACAA--| G C G CC C UUUACAC UGUUGUGG AGAC UUCA CAUGG UUUGA AG G ACAAUGCC UCUG GAGU GUACC GAACU UC A UAUACUGGUCAACUCAUGAC^ G A G A- A GCUUCAC . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | Although the 3' uridine is templated this give a three 3-nt offset. |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12540-v2_5p* |
| mirBase accession | None |
| Sequence |
0- CCUUCAGCAUGGCCUUUGACAG -22
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|
| Mature sequence | Esc-Mir-12540-v2_3p |
| mirBase accession | None |
| Sequence |
40- AUCAAGACCAUGGUGAGAGUC -61
Get sequence
|
