| MirGeneDB ID | Esc-Mir-12500 |
|---|---|
| Family name | MIR-12500 (all species) |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Npo-Mir-12500 Obi-Mir-12500-v1 Ovu-Mir-12500-v1 |
| Node of Origin (locus) | Cephalopoda |
| Node of Origin (family) | Cephalopoda |
| Genome context (esc-GCA_024364805.1_ASM2436480v1) |
CM044511.1: 75311421-75311481 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-12500-v1) |
Mir-12500-v1
CM044511.1: 75311421-75311481 [+]
Ensembl
Mir-12500-v2 CM044511.1: 75311421-75311481 [+] Ensembl Mir-12500-v3 CM044511.1: 75311421-75311481 [+] Ensembl |
| Variant | Esc-Mir-12500-v1 |
| Seed | UGUCGGC |
| Precursor (pre-Mir +30nt flank) |
UCCUGAUUGUGACGAAAGGGAGGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUAGGUUGCACCCCAGAUACUCCUAACUCAUCGet precursor sequence |
| Structure | 10 20 30 40 50 UCCUGAUUGUGACGAAA- AG U-| A CC C- A GAAUU GGG GC CC GCCAAACA CCG CGGCUGA AAGG \ CCC CG GG UGGUUUGU GGC GUCGGCU UUCC C CUACUCAAUCCUCAUAGA CA UU^ A U- CA G ACUCU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12500-v1_5p* |
| mirBase accession | None |
| Sequence |
0- CAAACACCCCGCCGGCUGAAAAGG -24
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|
| Mature sequence | Esc-Mir-12500-v1_3p |
| mirBase accession | None |
| Sequence |
37- UUGUCGGCUGACCGGUUGUUUGGU -61
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|
| Variant | Esc-Mir-12500-v2 |
| Seed | GUCGGCU |
| Precursor (pre-Mir +30nt flank) |
UCCUGAUUGUGACGAAAGGGAGGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUAGGUUGCACCCCAGAUACUCCUAACUCAUCGet precursor sequence |
| Structure | 10 20 30 40 50 UCCUGAUUGUGACGAAA- AG U-| A CC C- A GGAAUU GGG GC CC GCCAAACA CCG CGGCUGA AAG \ CCC CG GG UGGUUUGU GGC GUCGGCU UUC C CUACUCAAUCCUCAUAGA CA UU^ A U- CA G CACUCU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12500-v2_5p* |
| mirBase accession | None |
| Sequence |
0- CAAACACCCCGCCGGCUGAAAAG -23
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|
| Mature sequence | Esc-Mir-12500-v2_3p |
| mirBase accession | None |
| Sequence |
38- UGUCGGCUGACCGGUUGUUUGGU -61
Get sequence
|
| Variant | Esc-Mir-12500-v3 |
| Seed | UCGGCUG |
| Precursor (pre-Mir +30nt flank) |
UCCUGAUUGUGACGAAAGGGAGGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUAGGUUGCACCCCAGAUACUCCUAACUCAUCGet precursor sequence |
| Structure | 10 20 30 40 50 UCCUGAUUGUGACGAAA- AG U-| A CC C- A GGGAAUU GGG GC CC GCCAAACA CCG CGGCUGA AA \ CCC CG GG UGGUUUGU GGC GUCGGCU UU C CUACUCAAUCCUCAUAGA CA UU^ A U- CA G CCACUCU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Esc-Mir-12500-v3_5p* |
| mirBase accession | None |
| Sequence |
0- CAAACACCCCGCCGGCUGAAAA -22
Get sequence
|
| Mature sequence | Esc-Mir-12500-v3_3p |
| mirBase accession | None |
| Sequence |
39- GUCGGCUGACCGGUUGUUUGGU -61
Get sequence
|
