| MirGeneDB ID | Esc-Mir-12516 |
|---|
| Family name |
MIR-12516 (all species) |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Mir-12516
Ovu-Mir-12516
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(esc-GCA_024364805.1_ASM2436480v1) |
CM044509.1: 89863280-89863338 [-]
Ensembl
|
|---|
| Seed |
GUCUGUG |
|---|
Precursor
(pre-Mir +30nt flank) |
UUUUUAUUCUUUGAAGAUGGCUUUGUGAAAUGUCUGUGGGAUAAAGGUUAGUCUUUAAAAGAUAAACUAACACUUAAACCAAUGACAUUUUACUCGGCUAAUGAACUGCCGUGCAGUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUUUUAUUCUUUGAAGA--| UU UG GA AG CUUUAA
UGGCU GUGAAAUGUC UGG UAA GUUAGU \
AUCGG CAUUUUACAG ACC AUU CAAUCA A
ACUGACGUGCCGUCAAGUA^ CU UA AA CA AAUAGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Mir-12516_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUCUGUGGGAUAAAGGUUAGUC -23
Get sequence
|
|---|
| Star sequence |
Esc-Mir-12516_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUAACACUUAAACCAAUGACAUU -59
Get sequence
|
|---|
