| MirGeneDB ID | Esc-Novel-13 |
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| Family name |
ESC-NOVEL-13 (all species) |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. scolopes
|
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| Node of Origin (family) |
E. scolopes
|
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Genome context
(esc-GCA_024364805.1_ASM2436480v1) |
CM044510.1: 21093044-21093104 [+]
Ensembl
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| Seed |
GCCCUAU |
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Precursor
(pre-Mir +30nt flank) |
UGUAACUAAAUCAAUCUGGAAGUUUCUCGGAGCCCUAUGCCCUAGUCUCUGAUGUUCUCAAAUAUCUCAGUGACUUGAGCAAAGGGACAUCGAGAGAUUUUCGAUCUCACAACAAUCUGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGUAACUAAAUCAAUCU-- AG-| A CCU U UGUUCU
GGAAGUUUCUCGG CCCU UGC AGUC CUGA C
CUUUUAGAGAGCU GGGA ACG UCAG GACU A
UAGUCUAACAACACUCUAG ACA^ A AGU U CUAUAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +2 on the 3p arm. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
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| Mature sequence |
Esc-Novel-13_5p |
| mirBase accession | None |
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| Sequence |
0- AGCCCUAUGCCCUAGUCUCUGA -22
Get sequence
|
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| Star sequence |
Esc-Novel-13_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- AGUGACUUGAGCAAAGGGACAUC -61
Get sequence
|
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