MirGeneDB 3.0

24 microRNA genes with node of origin Daphnia
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Dma-Mir-2-o2 None MIR-2 GAUAAUU None None NC_046178.1 1060033 1060091 - Daphnia Protostomia No 1
Dpu-Mir-2-o2 None MIR-2 AUCACAG None None DAPPUscaffold_77 78818 78876 - Daphnia Protostomia No 1
Dma-Mir-87-o5a None MIR-87 UGAGCAA None None NC_046176.1 6157349 6157434 - Daphnia Protostomia No 1
Dpu-Mir-87-o5a None MIR-87 UGAGCAA None None DAPPUscaffold_1 2190896 2190980 + Daphnia Protostomia No 1
Dma-Mir-87-o5b None MIR-87 UGAGCAA None None NC_046176.1 6157168 6157231 - Daphnia Protostomia No 1
Dpu-Mir-87-o5b None MIR-87 UGAGCAA None None DAPPUscaffold_1 2191079 2191142 + Daphnia Protostomia No 1
Dma-Mir-279-o8 None MIR-279 GUGAGCG None None NC_046179.1 204663 204723 - Daphnia Protostomia No 1 1
Dpu-Mir-279-o8 None MIR-279 GACUAGA None None DAPPUscaffold_62 283702 283760 - Daphnia Protostomia No 1 1 1
Dma-Mir-279-o9 None MIR-279 GACUAGA None None NC_046182.1 2914774 2914845 + Daphnia Protostomia No
Dpu-Mir-279-o9 None MIR-279 GACUAGA None None DAPPUscaffold_63 523653 523745 - Daphnia Protostomia No
Dma-Mir-279-P1c None MIR-279 GACUAGA None None NC_046175.1 6287015 6287090 - Daphnia Protostomia No 1 1
Dpu-Mir-279-P1c None MIR-279 GACUAGA None None DAPPUscaffold_32 69703 69769 - Daphnia Protostomia No 1
Dma-Mir-279-P1d None MIR-279 GACUAGA None None NC_046175.1 6285937 6286000 - Daphnia Protostomia No 1
Dpu-Mir-279-P1d dpu-mir-279b MIR-279 GACUAGA None MIMAT0018923 DAPPUscaffold_32 68663 68726 - Daphnia Protostomia No 1
Dma-Mir-12603 None MIR-12603 GUGAUGU None None NC_046182.1 5639526 5639593 - Daphnia Daphnia No 1 1
Dpu-Mir-12603 None MIR-12603 GUGAUGU None None DAPPUscaffold_58 365534 365601 - Daphnia Daphnia No 1 1
Dma-Mir-12604 None MIR-12604 CUGGGUU None None NC_046174.1 2509619 2509677 + Daphnia Daphnia No 1
Dpu-Mir-12604 None MIR-12604 CUGGGUU None None DAPPUscaffold_24 361300 361359 - Daphnia Daphnia No 1
Dma-Mir-12606 None MIR-12606 CUUGGUU None None NC_046174.1 2509231 2509290 + Daphnia Daphnia No 1 1
Dpu-Mir-12606 None MIR-12606 CUUGGUU None None DAPPUscaffold_24 361694 361754 - Daphnia Daphnia No 1 1
Dpu-Mir-12607 None MIR-12607 ACUGGGU None None DAPPUscaffold_24 361858 361920 - Daphnia Daphnia Unknown 1
Dma-Mir-12607 V None MIR-12607 ACUGGGU None None NC_046174.1 2509081 2509143 + Daphnia Daphnia 2 No
Dma-Mir-12608 None MIR-12608 GGGGGAA None None NC_046175.1 6286446 6286507 - Daphnia Daphnia No
Dpu-Mir-12608 None MIR-12608 CACUGGG None None CAJVNM010000013.1:1301350-1301500 54 115 + Daphnia Daphnia No 1

(red - mature/co-mature, blue - star)

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