| MirGeneDB ID | Dpu-Mir-12608 |
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| Family name |
MIR-12608 (all species) |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Dma-Mir-12608
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Daphnia
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Genome context
(Daphnia_pulex.V1.0) |
CAJVNM010000013.1:1301350-1301500: 54-115 [+]
Ensembl
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| Seed |
CACUGGG |
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Precursor
(pre-Mir +30nt flank) |
GUAUAAUUUGUUUAGUCGAGCCAAGCAUCAGGGGGGAACUUUACUCAGUUUGAUUCAUAUUAUAUGCAAAUCACUGGGUACGUUCGCCCUUGGUGAAUGAAUCUUAAACUUCUAUUUUGAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUAUAAUUUGUUUAGUC--| GC AG G UU UU CAUAUU
GA CA CAUCAGGGG GAAC UACUCAGU GAUU \
CU GU GUGGUUCCC CUUG AUGGGUCA CUAA A
CAAGUUUUAUCUUCAAAUU^ AA AA G C- -- ACGUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Dpu-Novel-6 is not in the Ensembl assembly but is in the latest assembly at Genbank (PA42 4.2) |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Dpu-Mir-12608_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGGGGGAACUUUACUCAGUUUGAUU -25
Get sequence
|
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| Mature sequence |
Dpu-Mir-12608_3p |
| mirBase accession | None |
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| Sequence |
40- UCACUGGGUACGUUCGCCCUUG -62
Get sequence
|
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