| MirGeneDB ID | Dma-Mir-87-o5b |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
Dma-Mir-87-o5a
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| Orthologues |
Dpu-Mir-87-o5b
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Protostomia
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Genome context
(DMA_ASM399081) |
NC_046176.1: 6157168-6157231 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGUCAUCCAGAUCGGUGUAUUUUCGCUCUCAGCCUGAUUCUUGCUCGACCUAUGCUUCUAUCAAUGGGCGAGGUGAGCAAAGUUUCAGGUGCGUAAGCGGCACCUCCAAUCAUCUUAUACAUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CGUCAUCCAGAUCGGUGUAUUU-- CUCA- UU -| G AUGCUUCUA
UCGCU GCCUGA C UUGCUC ACCU \
GGCGA UGGACU G AACGAG UGGA U
UUUACAUAUUCUACUAACCUCCAC AUGCG UU A^ - GCGGGUAAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Dma-Mir-87-o5b_5p* |
| mirBase accession | None |
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| Sequence |
0- AGCCUGAUUCUUGCUCGACCU -21
Get sequence
|
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| Mature sequence |
Dma-Mir-87-o5b_3p |
| mirBase accession | None |
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| Sequence |
42- GUGAGCAAAGUUUCAGGUGCGU -64
Get sequence
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