| MirGeneDB ID | Dpu-Mir-12603 |
|---|
| Family name |
MIR-12603 (all species) |
|---|
| Species |
Common water flea (Daphnia pulex) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Dma-Mir-12603
|
|---|
| Node of Origin (locus) |
Daphnia
|
|---|
| Node of Origin (family) |
Daphnia
|
|---|
Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_58: 365534-365601 [-]
Ensembl
|
|---|
| Seed |
GUGAUGU |
|---|
Precursor
(pre-Mir +30nt flank) |
UGGCGUUUCUCCGAAACGUUGCUGAGCUGCUGUGAUGUAGAUUUUAAUACCUUGUGAUCUUGAGUAACUGUUCAAGUGAUUAAUAUUUACAUCACCUCAGCUCGGUGGCGACGAUCUCCCAACCGAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGGCGUUUCUCCGAAAC--| UG CU U AC UGUGAUCUUG
GU CUGAGCUG GUGAUGUAGAU UUAAU CU A
CG GGCUCGAC CACUACAUUUA AAUUA GA G
CUAGCCAACCCUCUAGCAG^ GU UC U GU ACUUGUCAAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Dpu-Mir-12603_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGAUGUAGAUUUUAAUACCU -22
Get sequence
|
|---|
| Star sequence |
Dpu-Mir-12603_3p* |
| mirBase accession | None |
|---|
| Sequence |
46- UGAUUAAUAUUUACAUCACCUC -68
Get sequence
|
|---|
