MirGeneDB 3.0
MirGeneDB ID

Dya-Mir-3-P1

Family name MIR-3 (all species)
Species Fruit fly (Drosophila yakuba)
MiRBase ID dya-mir-309
Paralogues Dya-Mir-3-P2  Dya-Mir-3-P3 
Orthologues Aae-Mir-3-o1a  Aae-Mir-3-o1b  Aga-Mir-3-o1  Dan-Mir-3-P1  Dlo-Mir-3  Dma-Mir-3  Dme-Mir-3-P1  Dmo-Mir-3-P1  Dpu-Mir-3  Dsi-Mir-3-P1  Gpa-Mir-3 
Node of Origin (locus) Drosophila
Node of Origin (family) Pancrustacea
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)		 2R: 13623513-13623571 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P1)		 Mir-3-P1 2R: 13623513-13623571 [+] UCSC Ensembl
Mir-3-P2 2R: 13623628-13623684 [+] UCSC Ensembl
Mir-279-P1 2R: 13623775-13623848 [+] UCSC Ensembl
Mir-9-P9 2R: 13623927-13623983 [+] UCSC Ensembl
Mir-2-P5 2R: 13624064-13624124 [+] UCSC Ensembl
Mir-2-P6a 2R: 13624211-13624273 [+] UCSC Ensembl
Mir-2-P6b 2R: 13624349-13624410 [+] UCSC Ensembl
Mir-2-P6c 2R: 13624497-13624562 [+] UCSC Ensembl
Seed CACUGGG
Precursor
(pre-Mir +30nt flank)		 
AUCAAAGCAAAGUUUGGAACAGCAAUUAUACGACAAACCUUGUUCUGUUUUGCCAAUUUCCUAGCCAGCACUGGGUAAAGUUUGUCCUAUAAUCCCGAAACGACGACCAGCAGCCAAGU
Get precursor sequence
Structure
        10        20          30        40        50         
AUCAAAGCAAAGUUUGGAACAGCA--|     C       C   UU U  U   CCAAUU 
                          AUUAUA GACAAAC UUG  C GU UUG      \
                          UAAUAU CUGUUUG AAU  G CA GAC      U
UGAACCGACGACCAGCAGCAAAGCCC^     C       A   GG U  C   CGAUCC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
He Wh
Star sequence

Dya-Mir-3-P1_5p*
mirBase accessionNone
Sequence 
0- CGACAAACCUUGUUCUGUUUUG -22
Get sequence
Mature sequence

Dya-Mir-3-P1_3p
mirBase accessionMIMAT0009085
Sequence 
37- GCACUGGGUAAAGUUUGUCCUA -59
Get sequence