MirGeneDB 2.1

MirGeneDB ID

Dya-Mir-3-P1

Family name MIR-3 (all species)
Seed CACUGGG
Species Fruit fly (Drosophila yakuba)
MiRBase ID dya-mir-3
Paralogues Dya-Mir-3-P2  Dya-Mir-3-P3 
Orthologues Dan-Mir-3-P1  Dma-Mir-3  Dme-Mir-3-P1  Dmo-Mir-3-P1  Dpu-Mir-3  Dsi-Mir-3-P1 
Node of Origin (locus) Drosophila
Node of Origin (family) Pancrustacea
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)
2R: 13623628-13623684 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3-P1)
Mir-3-P2 2R: 13623513-13623571 [+] UCSC Ensembl
Mir-3-P1 2R: 13623628-13623684 [+] UCSC Ensembl
Mir-279-P2 2R: 13623775-13623848 [+] UCSC Ensembl
Mir-9-P9 2R: 13623927-13623983 [+] UCSC Ensembl
Mir-2-P5 2R: 13624064-13624124 [+] UCSC Ensembl
Mir-2-P6a 2R: 13624211-13624273 [+] UCSC Ensembl
Mir-2-P6b 2R: 13624349-13624410 [+] UCSC Ensembl
Mir-2-P6c 2R: 13624497-13624562 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUGUGAACCAUCAAAGGUCCUGAUCCUGGGAUGCAUCUUGUGCAGUCAUGUUUCCAUCUCACAUCACUGGGCAAAGUGUGUCUCAAGAUCUUGGCCACUUCGACGCAGCUACAAA
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Structure
        10          20        30        40        50        
AAGUGUGAACCAUCAAA--|   CU    C         UC    G    C   UUUCC 
                   GGUC  GAUC UGGGAUGCA  UUGU CAGU AUG     \
                   CCGG  CUAG ACUCUGUGU  AACG GUCA UAC     A
AAACAUCGACGCAGCUUCA^   UU    A         GA    G    C   ACUCU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dya-Mir-3-P1_5p*

mirBase accessionNone
Sequence
0- GGAUGCAUCUUGUGCAGUCAUG -22
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Mature sequence

Dya-Mir-3-P1_3p

mirBase accessionMIMAT0009074
Sequence
35- UCACUGGGCAAAGUGUGUCUCA -57
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