Mir-3-P1

MirGeneDB ID

Dsi-Mir-3-P1

Family name

MIR-3 (all species)

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-309

Paralogues

Dsi-Mir-3-P2 Dsi-Mir-3-P3

Orthologues

Aae-Mir-3-o1a Aae-Mir-3-o1b Aga-Mir-3-o1 Dan-Mir-3-P1 Dlo-Mir-3 Dma-Mir-3 Dme-Mir-3-P1 Dmo-Mir-3-P1 Dpu-Mir-3 Dya-Mir-3-P1 Gpa-Mir-3

Node of Origin (locus)

Drosophila

Node of Origin (family)

Pancrustacea

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2R: 16151557-16151615 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P1)

Mir-4983 2R: 16127028-16127099 [+] UCSC Ensembl
Mir-2-P6c 2R: 16150571-16150636 [-] UCSC Ensembl
Mir-2-P6b 2R: 16150723-16150784 [-] UCSC Ensembl
Mir-2-P6a 2R: 16150863-16150925 [-] UCSC Ensembl
Mir-2-P5 2R: 16151011-16151070 [-] UCSC Ensembl
Mir-9-P9 2R: 16151148-16151204 [-] UCSC Ensembl
Mir-279-P1 2R: 16151283-16151358 [-] UCSC Ensembl
Mir-3-P2 2R: 16151447-16151503 [-] UCSC Ensembl
Mir-3-P1 2R: 16151557-16151615 [-] UCSC Ensembl

Seed

CACUGGG

Precursor
(pre-Mir +30nt flank)

CAAGUCUUAAAGUUUGGAACAGCAAUUAUACGACAAACCUUGUUCGGUUUUGCCAAUUUCCAAGCCAGCACUGGGUAAAGUUUGUCCUAUAAUCCCGAAACGACGACCAGCUAAUUGUG

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Structure

        10        20          30        40        50         
CAAGUCUUAAAGUUUGGAACAGCA--|     C       C   UU    U   CCAAUU 
                          AUUAUA GACAAAC UUG  CGGU UUG      \
                          UAAUAU CUGUUUG AAU  GUCA GAC      U
GUGUUAAUCGACCAGCAGCAAAGCCC^     C       A   GG    C   CGAACC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

He	Wh

Star sequence

Dsi-Mir-3-P1_5p*

mirBase accession

None

Sequence

0- CGACAAACCUUGUUCGGUUUUG -22

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Mature sequence

Dsi-Mir-3-P1_3p

mirBase accession

MIMAT0008894

Sequence

37- GCACUGGGUAAAGUUUGUCCUA -59

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