MirGeneDB ID | Dpu-Mir-3 |
Family name |
MIR-3 (all species) |
Seed |
CACUGGG |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-3-P2a1
Aae-Mir-3-P2a2
Aae-Mir-3-P2b
Bge-Mir-3-P28a-v1
Bge-Mir-3-P28a-v2
Bge-Mir-3-P28b-v1
Bge-Mir-3-P28b-v2
Bge-Mir-3-P29-v1
Bge-Mir-3-P29-v2
Dan-Mir-3-P1
Dan-Mir-3-P2
Dan-Mir-3-P3
Dma-Mir-3
Dme-Mir-3-P1
Dme-Mir-3-P2
Dme-Mir-3-P3
Dmo-Mir-3-P1
Dmo-Mir-3-P2
Dmo-Mir-3-P3
Dsi-Mir-3-P1
Dsi-Mir-3-P2
Dsi-Mir-3-P3
Dya-Mir-3-P1
Dya-Mir-3-P2
Dya-Mir-3-P3
Hme-Mir-3-P14
Hme-Mir-3-P15
Hme-Mir-3-P16
Hme-Mir-3-P17
Hme-Mir-3-P18
Hme-Mir-3-P19
Hme-Mir-3-P20
Hme-Mir-3-P21
Hme-Mir-3-P22
Hme-Mir-3-P23
Hme-Mir-3-P24
Hme-Mir-3-P25
Hme-Mir-3-P26
Hme-Mir-3-P27
Tca-Mir-3-P4
Tca-Mir-3-P5
Tca-Mir-3-P6
Tca-Mir-3-P7-v1
Tca-Mir-3-P7-v2
Tca-Mir-3-P8
Tca-Mir-3-P9a
Tca-Mir-3-P9b
Tca-Mir-3-P10
Tca-Mir-3-P11
Tca-Mir-3-P12a
Tca-Mir-3-P12b
Tca-Mir-3-P13a
Tca-Mir-3-P13b
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Pancrustacea
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_24: 361462-361522 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGAAAUGAAAAAUAACCUGGUAUUAGUCUAGGUGAACUUUGCCCAGAUUAGACUUGUAAUUGUUAGUCACUGGGUAAAGUUUGUCCGUUGACUAGUUCCACUUACCUCUUCUGCCUGUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGAAAUGAAAAAUAACC-- U UA- -| AUUA UGUA
UGG AUUAGUC GG UGAACUUUGCCCAG GACU A
ACC UGAUCAG CC GUUUGAAAUGGGUC CUGA U
CUUGUCCGUCUUCUCCAUUC U UUG U^ A--- UUGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Dpu-Mir-3_5p* |
mirBase accession | None |
Sequence |
0- AGGUGAACUUUGCCCAGAUUAGACU -25
Get sequence
|
Mature sequence |
Dpu-Mir-3_3p |
mirBase accession | None |
Sequence |
37- UCACUGGGUAAAGUUUGUCCGUUG -61
Get sequence
|