Mir-184

MirGeneDB ID

Dpu-Mir-184

Family name

MIR-184 (all species)

Species

Common water flea (Daphnia pulex)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Ava-Mir-184-P41 Ava-Mir-184-P42 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Csc-Mir-184-P24 Csc-Mir-184-P25 Cte-Mir-184-P16 Cte-Mir-184-P17 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dre-Mir-184-P1 Dre-Mir-184-P2 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Efe-Mir-184-o1 Efe-Mir-184-o2 Efe-Mir-184-o3 Efe-Mir-184-o4 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gmo-Mir-184-P1 Gmo-Mir-184-P2 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hru-Mir-184-o5 Hru-Mir-184-o6 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lgi-Mir-184-P5 Lgi-Mir-184-P6 Lhy-Mir-184 Llo-Mir-184-P32 Llo-Mir-184-P33 Llo-Mir-184-P34 Llo-Mir-184-P35 Llo-Mir-184-P36 Llo-Mir-184-P37 Llo-Mir-184-P38 Llo-Mir-184-P39 Llo-Mir-184-P40 Loc-Mir-184 Lpo-Mir-184-P18 Lpo-Mir-184-P19 Lpo-Mir-184-P20 Lpo-Mir-184-P21 Lpo-Mir-184-P22 Lpo-Mir-184-P23 Mal-Mir-184-P1 Mal-Mir-184-P2 Mdo-Mir-184 Mgi-Mir-184-P7 Mgi-Mir-184-P8a Mgi-Mir-184-P8b Mgi-Mir-184-P8c Mgi-Mir-184-P8d Mgi-Mir-184-P9 Mgi-Mir-184-P10 Mgi-Mir-184-P11 Mgi-Mir-184-P12 Mgi-Mir-184-P13a Mgi-Mir-184-P13b Mgi-Mir-184-P14 Mgi-Mir-184-P15a1 Mgi-Mir-184-P15a2 Mgi-Mir-184-P15a3 Mgi-Mir-184-P15a4 Mgi-Mir-184-P15a5 Mgi-Mir-184-P15a6 Mgi-Mir-184-P15a7 Mgi-Mir-184-P15b Mgi-Mir-184-P15c Mgi-Mir-184-P15d Mgi-Mir-184-P15e1 Mgi-Mir-184-P15e2 Mgi-Mir-184-P15e3 Mgi-Mir-184-P15f Mgi-Mir-184-P15g1 Mgi-Mir-184-P15g2 Mgi-Mir-184-P15g3 Mgi-Mir-184-P15h Mgi-Mir-184-P15i Mgi-Mir-184-P15j Mgi-Mir-184-P15k Mgi-Mir-184-P15l1 Mgi-Mir-184-P15l2 Mgi-Mir-184-P15m Mgi-Mir-184-P15n Mgi-Mir-184-P15o Mgi-Mir-184-P15p Mgi-Mir-184-P15q Mgi-Mir-184-P15r Mgi-Mir-184-P15s Mgi-Mir-184-P15t Mgi-Mir-184-P15u Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Obi-Mir-184-P26 Obi-Mir-184-P27 Ocu-Mir-184 Ofu-Mir-184 Ovu-Mir-184-P26 Ovu-Mir-184-P27 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pca-Mir-184-P30 Pca-Mir-184-P31 Pcr-Mir-184-P43 Pcr-Mir-184-P44 Pcr-Mir-184-P45 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sme-Mir-184-P28 Sme-Mir-184-P29 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tni-Mir-184-P1 Tni-Mir-184-P2 Tur-Mir-184 War-Mir-184 Xla-Mir-184-P3 Xla-Mir-184-P4 Xtr-Mir-184

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Daphnia_pulex.V1.0)

DAPPUscaffold_24: 317035-317138 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-184)

Mir-184 DAPPUscaffold_24: 317035-317138 [+] Ensembl
Mir-12604 DAPPUscaffold_24: 361300-361359 [-] Ensembl
Mir-3 DAPPUscaffold_24: 361462-361522 [-] Ensembl
Mir-12606 DAPPUscaffold_24: 361694-361754 [-] Ensembl
Mir-12607 DAPPUscaffold_24: 361858-361920 [-] Ensembl

Seed

GGACGGA

Precursor
(pre-Mir +30nt flank)

CGCUGUGGAGAAAAUGGUUCAAUGACUUGGCCUUAUCAUUCACCAGUCCGGUUAGAUUUUUUGGAAAGUUCCUUUUUCUUGGUUGCACCAAGAUUUAAGUUGAACACCCUACUGGACGGAGAACUGAUAAGGGCGUGUCUUGCAACACAAUCGACGAAUUCUUU

Get precursor sequence

Structure

        10           20        30         40        50        60        70        80 
CGCUGUGGAGAAAAUGGUU---|  U   U  G        -   A  A       UAGAUUUUUUGGAAAGUUCCUUUUUCUU 
                      CAA GAC UG CCUUAUCA UUC CC GUCCGGU                            G
                      GUU CUG GC GGAAUAGU AAG GG CAGGUCA                            G
UUUCUUAAGCAGCUAACACAAC^  -   U  G        C   A  -       UCCCACAAGUUGAAUUUAGAACCACGUU 
  160       150       140        130       120        110       100        90

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dpu-Mir-184_5p*

mirBase accession

None

Sequence

0- CCUUAUCAUUCACCAGUCCGGU -22

Get sequence

Mature sequence

Dpu-Mir-184_3p

mirBase accession

None

Sequence

82- UGGACGGAGAACUGAUAAGGGC -104

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