Mir-184-P1

MirGeneDB ID

Tni-Mir-184-P1

Family name

MIR-184 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-184-P2

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dre-Mir-184-P1 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Efe-Mir-184-o1 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gmo-Mir-184-P1 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lhy-Mir-184 Loc-Mir-184 Mal-Mir-184-P1 Mdo-Mir-184 Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Ofu-Mir-184 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tur-Mir-184 War-Mir-184 Xtr-Mir-184

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Nephrozoa

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

13: 2752851-2752914 [+] UCSC Ensembl

Seed

GGACGGA

Precursor
(pre-Mir +30nt flank)

GUUCAGGUUGUAAUGUUGUCAAGCUCAUCUCCUUAUCACUUUUCCAGCCCAGCUAUCAAUUGAAAAAUGUGUUGGACGGAGAACUGAUAAGGGCUAUGUGUCUGACACUUUCCAUCACUGAUAA

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Structure

        10         20         30        40        50        60  
GUUCAGGUUGUAAUGUU-    AG U   C-|        C      AGC     UAUCAAUU 
                  GUCA  C CAU  UCCUUAUCA UUUUCC   CCAGC        \
                  CAGU  G GUA  GGGAAUAGU AAGAGG   GGUUG        G
AAUAGUCACUACCUUUCA    CU U   UC^        C      CA-     UGUAAAAA 
  120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-184-P1_5p* (predicted)

mirBase accession

None

Sequence

0- CCUUAUCACUUUUCCAGCCCAGC -23

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Mature sequence

Tni-Mir-184-P1_3p

mirBase accession

None

Sequence

42- UGGACGGAGAACUGAUAAGGGC -64

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