Mir-184-P42

MirGeneDB ID

Ava-Mir-184-P42

Family name

MIR-184 (all species)

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Ava-Mir-184-P41

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lhy-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Ofu-Mir-184 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tur-Mir-184 War-Mir-184 Xtr-Mir-184

Node of Origin (locus)

A. vaga

Node of Origin (family)

Nephrozoa

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075495.1: 13625649-13625709 [-] Ensembl

Seed

GGACGGA

Precursor
(pre-Mir +30nt flank)

UACCUAUUGAAAAACAGAUGAGUUUUCAACACCUCGUUAAUCUUUGUCACAAAUCGAUUUUUUUCUUUUGGACGGAGGUUUGACGAGGAAUUGAGGCUCAUCUUAACAAUCAUAUUGAAUC

Get precursor sequence

Structure

        10           20        30        40         50          
UACCUAUUGAAAAACAG---|       U   CA         -        A    UCGAUU 
                    AUGAGUUU CAA  CCUCGUUAA UCUUUGUC CAAA      \
                    UACUCGGA GUU  GGAGCAGUU GGAGGCAG GUUU      U
CUAAGUUAUACUAACAAUUC^       -   AA         U        -    UCUUUU 
 .       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

To	To

Star sequence

Ava-Mir-184-P42_5p*

mirBase accession

None

Sequence

0- ACCUCGUUAAUCUUUGUCACAAA -23

Get sequence

Mature sequence

Ava-Mir-184-P42_3p

mirBase accession

None

Sequence

38- UGGACGGAGGUUUGACGAGGAAU -61

Get sequence