MirGeneDB ID | Mgi-Mir-184-P12 |
Family name |
MIR-184 (all species) |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
|
Paralogues |
Mgi-Mir-184-P7
Mgi-Mir-184-P8a
Mgi-Mir-184-P8b
Mgi-Mir-184-P8c
Mgi-Mir-184-P8d
Mgi-Mir-184-P9
Mgi-Mir-184-P10
Mgi-Mir-184-P11
Mgi-Mir-184-P13a
Mgi-Mir-184-P13b
Mgi-Mir-184-P14
Mgi-Mir-184-P15a1
Mgi-Mir-184-P15a2
Mgi-Mir-184-P15a3
Mgi-Mir-184-P15a4
Mgi-Mir-184-P15a5
Mgi-Mir-184-P15a6
Mgi-Mir-184-P15a7
Mgi-Mir-184-P15b
Mgi-Mir-184-P15c
Mgi-Mir-184-P15d
Mgi-Mir-184-P15e1
Mgi-Mir-184-P15e2
Mgi-Mir-184-P15e3
Mgi-Mir-184-P15f
Mgi-Mir-184-P15g1
Mgi-Mir-184-P15g2
Mgi-Mir-184-P15g3
Mgi-Mir-184-P15h
Mgi-Mir-184-P15i
Mgi-Mir-184-P15j
Mgi-Mir-184-P15k
Mgi-Mir-184-P15l1
Mgi-Mir-184-P15l2
Mgi-Mir-184-P15m
Mgi-Mir-184-P15n
Mgi-Mir-184-P15o
Mgi-Mir-184-P15p
Mgi-Mir-184-P15q
Mgi-Mir-184-P15r
Mgi-Mir-184-P15s
Mgi-Mir-184-P15t
Mgi-Mir-184-P15u
|
Orthologues |
Aae-Mir-184
Aca-Mir-184
Aga-Mir-184
Agr-Mir-184
Ami-Mir-184
Asu-Mir-184
Bfl-Mir-184
Bge-Mir-184
Bko-Mir-184
Bla-Mir-184
Bpl-Mir-184
Bta-Mir-184
Cfa-Mir-184
Cin-Mir-184
Cja-Mir-184
Cli-Mir-184
Cmi-Mir-184
Cpi-Mir-184
Cpo-Mir-184
Dan-Mir-184
Dgr-Mir-184
Dlo-Mir-184
Dma-Mir-184
Dme-Mir-184
Dmo-Mir-184
Dno-Mir-184
Dpu-Mir-184
Dsi-Mir-184
Dya-Mir-184
Eba-Mir-184
Eca-Mir-184
Egr-Mir-184
Esc-Mir-184
Ete-Mir-184
Gga-Mir-184
Gja-Mir-184
Gpa-Mir-184
Gsa-Mir-184
Gsp-Mir-184
Hme-Mir-184
Hsa-Mir-184
Isc-Mir-184
Laf-Mir-184
Lan-Mir-184
Lch-Mir-184
Lhy-Mir-184
Loc-Mir-184
Mdo-Mir-184
Mml-Mir-184
Mmr-Mir-184
Mmu-Mir-184
Mom-Mir-184
Neu-Mir-184
Npo-Mir-184
Oan-Mir-184
Ocu-Mir-184
Ofu-Mir-184
Pab-Mir-184
Pau-Mir-184
Pbv-Mir-184
Pdu-Mir-184
Pfl-Mir-184
Pma-Mir-184
Pmi-Mir-184
Pve-Mir-184
Rno-Mir-184
Rph-Mir-184
Sha-Mir-184
Sko-Mir-184
Sne-Mir-184
Snu-Mir-184
Spt-Mir-184
Spu-Mir-184
Sto-Mir-184
Tca-Mir-184
Tgu-Mir-184
Tur-Mir-184
War-Mir-184
Xtr-Mir-184
|
Node of Origin (locus) |
C. gigas
|
Node of Origin (family) |
Nephrozoa
|
Genome context (CGI_GCA_000297895.1) |
scaffold121: 718786-718842 [-]
Ensembl
|
Clustered miRNAs (< 50kb from Mir-184-P12) |
Mir-184-P15a1
scaffold121: 718149-718206 [-]
Ensembl
Mir-184-P15e1
scaffold121: 718275-718332 [-]
Ensembl
Mir-184-P15e2
scaffold121: 718401-718458 [-]
Ensembl
Mir-184-P15c
scaffold121: 718530-718587 [-]
Ensembl
Mir-184-P15d
scaffold121: 718658-718715 [-]
Ensembl
Mir-184-P12
scaffold121: 718786-718842 [-]
Ensembl
Mir-184-P15m
scaffold121: 718913-718970 [-]
Ensembl
Mir-184-P15g1
scaffold121: 719041-719098 [-]
Ensembl
Mir-184-P15g2
scaffold121: 719169-719226 [-]
Ensembl
Mir-184-P15g3
scaffold121: 719297-719354 [-]
Ensembl
Mir-184-P15a2
scaffold121: 719424-719481 [-]
Ensembl
Mir-184-P15f
scaffold121: 719552-719609 [-]
Ensembl
Mir-184-P15l1
scaffold121: 719680-719737 [-]
Ensembl
Mir-184-P15j
scaffold121: 720064-720121 [-]
Ensembl
Mir-184-P15h
scaffold121: 720192-720249 [-]
Ensembl
Mir-184-P15a3
scaffold121: 720319-720376 [-]
Ensembl
Mir-184-P15e3
scaffold121: 720447-720504 [-]
Ensembl
Mir-184-P15l2
scaffold121: 720575-720632 [-]
Ensembl
Mir-184-P9
scaffold121: 720703-720760 [-]
Ensembl
Mir-184-P11
scaffold121: 721087-721144 [-]
Ensembl
Mir-184-P15i
scaffold121: 721214-721271 [-]
Ensembl
Mir-184-P8b
scaffold121: 721341-721398 [-]
Ensembl
Mir-184-P15k
scaffold121: 721469-721526 [-]
Ensembl
Mir-184-P15a4
scaffold121: 721600-721657 [-]
Ensembl
Mir-184-P8c
scaffold121: 721728-721785 [-]
Ensembl
Mir-184-P15a5
scaffold121: 721856-721913 [-]
Ensembl
Mir-184-P15b
scaffold121: 721987-722044 [-]
Ensembl
Mir-184-P15a6
scaffold121: 722115-722172 [-]
Ensembl
Mir-184-P15a7
scaffold121: 722371-722428 [-]
Ensembl
|
Seed |
CUUGUCA |
Precursor (pre-Mir +30nt flank) |
CACAGAUAAUAAAUACAACCUGUUGCGUUUCCUUGUCACACAUUCGUCACAGUGACAUUCAAACACUGGACGGAAUCUGAUAAGGGAUUGCUAAGCGAACUUCUUUAUGAUGUCAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CACAGAUAAUAAAUACAAC---| GUU U CACA A ACAU
CU GCG UUCCUUGUCA UUCGUC CAGUG \
GA CGU AGGGAAUAGU AGGCAG GUCAC U
GAACUGUAGUAUUUCUUCAAGC^ AU- U CUA- - AAAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Mir-184-P12_5p |
mirBase accession | None |
Sequence |
0- CCUUGUCACACAUUCGUCACAGUG -24
Get sequence
|
Star sequence |
Mgi-Mir-184-P12_3p* |
mirBase accession | None |
Sequence |
35- CUGGACGGAAUCUGAUAAGGGA -57
Get sequence
|