Mir-184-P15e2

MirGeneDB ID

Mgi-Mir-184-P15e2

Family name

Species

MiRBase ID

Paralogues

Mgi-Mir-184-P7 Mgi-Mir-184-P8a Mgi-Mir-184-P8b Mgi-Mir-184-P8c Mgi-Mir-184-P8d Mgi-Mir-184-P9 Mgi-Mir-184-P10 Mgi-Mir-184-P11 Mgi-Mir-184-P12 Mgi-Mir-184-P13a Mgi-Mir-184-P13b Mgi-Mir-184-P14 Mgi-Mir-184-P15a1 Mgi-Mir-184-P15a2 Mgi-Mir-184-P15a3 Mgi-Mir-184-P15a4 Mgi-Mir-184-P15a5 Mgi-Mir-184-P15a6 Mgi-Mir-184-P15a7 Mgi-Mir-184-P15b Mgi-Mir-184-P15c Mgi-Mir-184-P15d Mgi-Mir-184-P15e1 Mgi-Mir-184-P15e3 Mgi-Mir-184-P15f Mgi-Mir-184-P15g1 Mgi-Mir-184-P15g2 Mgi-Mir-184-P15g3 Mgi-Mir-184-P15h Mgi-Mir-184-P15i Mgi-Mir-184-P15j Mgi-Mir-184-P15k Mgi-Mir-184-P15l1 Mgi-Mir-184-P15l2 Mgi-Mir-184-P15m Mgi-Mir-184-P15n Mgi-Mir-184-P15o Mgi-Mir-184-P15p Mgi-Mir-184-P15q Mgi-Mir-184-P15r Mgi-Mir-184-P15s Mgi-Mir-184-P15t Mgi-Mir-184-P15u

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lhy-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Ofu-Mir-184 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tur-Mir-184 War-Mir-184 Xtr-Mir-184

Node of Origin (locus)

C. gigas

Node of Origin (family)

Nephrozoa

Genome context
(CGI_GCA_000297895.1)

scaffold121: 718401-718458 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-184-P15e2)

Mir-184-P15a1 scaffold121: 718149-718206 [-] Ensembl
Mir-184-P15e1 scaffold121: 718275-718332 [-] Ensembl
Mir-184-P15e2 scaffold121: 718401-718458 [-] Ensembl
Mir-184-P15c scaffold121: 718530-718587 [-] Ensembl
Mir-184-P15d scaffold121: 718658-718715 [-] Ensembl
Mir-184-P12 scaffold121: 718786-718842 [-] Ensembl
Mir-184-P15m scaffold121: 718913-718970 [-] Ensembl
Mir-184-P15g1 scaffold121: 719041-719098 [-] Ensembl
Mir-184-P15g2 scaffold121: 719169-719226 [-] Ensembl
Mir-184-P15g3 scaffold121: 719297-719354 [-] Ensembl
Mir-184-P15a2 scaffold121: 719424-719481 [-] Ensembl
Mir-184-P15f scaffold121: 719552-719609 [-] Ensembl
Mir-184-P15l1 scaffold121: 719680-719737 [-] Ensembl
Mir-184-P15j scaffold121: 720064-720121 [-] Ensembl
Mir-184-P15h scaffold121: 720192-720249 [-] Ensembl
Mir-184-P15a3 scaffold121: 720319-720376 [-] Ensembl
Mir-184-P15e3 scaffold121: 720447-720504 [-] Ensembl
Mir-184-P15l2 scaffold121: 720575-720632 [-] Ensembl
Mir-184-P9 scaffold121: 720703-720760 [-] Ensembl
Mir-184-P11 scaffold121: 721087-721144 [-] Ensembl
Mir-184-P15i scaffold121: 721214-721271 [-] Ensembl
Mir-184-P8b scaffold121: 721341-721398 [-] Ensembl
Mir-184-P15k scaffold121: 721469-721526 [-] Ensembl
Mir-184-P15a4 scaffold121: 721600-721657 [-] Ensembl
Mir-184-P8c scaffold121: 721728-721785 [-] Ensembl
Mir-184-P15a5 scaffold121: 721856-721913 [-] Ensembl
Mir-184-P15b scaffold121: 721987-722044 [-] Ensembl
Mir-184-P15a6 scaffold121: 722115-722172 [-] Ensembl
Mir-184-P15a7 scaffold121: 722371-722428 [-] Ensembl

Seed

GGACGGA

Precursor
(pre-Mir +30nt flank)

ACAGAUAACAAAUAUAACUUUGUUGCGUUUCCUUGUCACACAUUCGUCACAGUGGCAUUCAAACACUGGACGGAAGUCUGAUAAGGGAUCGCUAAGGGAACUUCUUCAUGAUGUCAGA

Get precursor sequence

Structure

        10           20        30        40        50         
ACAGAUAACAAAUAUAA---|   GUU   U          C  A      A    GGCAU 
                    CUUU   GCG UUCCUUGUCA AC UUCGUC CAGU     \
                    GGGA   CGC AGGGAAUAGU UG AGGCAG GUCA     U
AGACUGUAGUACUUCUUCAA^   AU-   U          C  A      -    CAAAC 
      110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-184-P15e2_5p*

mirBase accession

None

Sequence

0- CCUUGUCACACAUUCGUCACAGU -23

Get sequence

Mature sequence

Mgi-Mir-184-P15e2_3p

mirBase accession

None

Sequence

36- UGGACGGAAGUCUGAUAAGGGA -58

Get sequence