Mir-184-P15n

MirGeneDB ID

Mgi-Mir-184-P15n

Family name

Species

MiRBase ID

Paralogues

Mgi-Mir-184-P7 Mgi-Mir-184-P8a Mgi-Mir-184-P8b Mgi-Mir-184-P8c Mgi-Mir-184-P8d Mgi-Mir-184-P9 Mgi-Mir-184-P10 Mgi-Mir-184-P11 Mgi-Mir-184-P12 Mgi-Mir-184-P13a Mgi-Mir-184-P13b Mgi-Mir-184-P14 Mgi-Mir-184-P15a1 Mgi-Mir-184-P15a2 Mgi-Mir-184-P15a3 Mgi-Mir-184-P15a4 Mgi-Mir-184-P15a5 Mgi-Mir-184-P15a6 Mgi-Mir-184-P15a7 Mgi-Mir-184-P15b Mgi-Mir-184-P15c Mgi-Mir-184-P15d Mgi-Mir-184-P15e1 Mgi-Mir-184-P15e2 Mgi-Mir-184-P15e3 Mgi-Mir-184-P15f Mgi-Mir-184-P15g1 Mgi-Mir-184-P15g2 Mgi-Mir-184-P15g3 Mgi-Mir-184-P15h Mgi-Mir-184-P15i Mgi-Mir-184-P15j Mgi-Mir-184-P15k Mgi-Mir-184-P15l1 Mgi-Mir-184-P15l2 Mgi-Mir-184-P15m Mgi-Mir-184-P15o Mgi-Mir-184-P15p Mgi-Mir-184-P15q Mgi-Mir-184-P15r Mgi-Mir-184-P15s Mgi-Mir-184-P15t Mgi-Mir-184-P15u

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lhy-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Ofu-Mir-184 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tur-Mir-184 War-Mir-184 Xtr-Mir-184

Node of Origin (locus)

C. gigas

Node of Origin (family)

Nephrozoa

Genome context
(CGI_GCA_000297895.1)

scaffold43150: 63749-63806 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-184-P15n)

Mir-184-P8a scaffold43150: 62920-62976 [-] Ensembl
Mir-184-P15s scaffold43150: 63192-63248 [-] Ensembl
Mir-184-P15t scaffold43150: 63471-63527 [-] Ensembl
Mir-184-P15n scaffold43150: 63749-63806 [-] Ensembl
Mir-184-P15o scaffold43150: 64048-64105 [-] Ensembl
Mir-184-P15u scaffold43150: 64385-64441 [-] Ensembl
Mir-184-P15p scaffold43150: 65310-65367 [-] Ensembl
Mir-184-P10 scaffold43150: 66053-66110 [-] Ensembl
Mir-184-P8d scaffold43150: 66305-66362 [-] Ensembl
Mir-184-P13b scaffold43150: 66456-66512 [-] Ensembl
Mir-184-P14 scaffold43150: 66584-66641 [-] Ensembl
Mir-184-P15q scaffold43150: 66926-66983 [-] Ensembl
Mir-184-P15r scaffold43150: 67056-67113 [-] Ensembl
Mir-184-P13a scaffold43150: 67584-67641 [-] Ensembl

Seed

GGACGGA

Precursor
(pre-Mir +30nt flank)

UAUGAGAAUAUCCUGUUUCUGUCUGUGUUUCCUUGUCAUACAUUCGUCACAGUGGCAUUCAAACACUGGACGGAAGUCUGAUAAGGGAUCGCUAAGGAACUUCUUCAAAAUGCCUAGA

Get precursor sequence

Structure

        10           20        30        40        50         
UAUGAGAAUAUCCUGUU---|  GUCU   U          U  A      A    GGCAU 
                    UCU    GUG UUCCUUGUCA AC UUCGUC CAGU     \
                    AGG    CGC AGGGAAUAGU UG AGGCAG GUCA     U
AGAUCCGUAAAACUUCUUCA^  AAU-   U          C  A      -    CAAAC 
      110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-184-P15n_5p*

mirBase accession

None

Sequence

0- CCUUGUCAUACAUUCGUCACAGU -23

Get sequence

Mature sequence

Mgi-Mir-184-P15n_3p

mirBase accession

None

Sequence

36- UGGACGGAAGUCUGAUAAGGGA -58

Get sequence