MirGeneDB ID | Mgi-Mir-184-P15o |
Family name |
MIR-184 (all species) |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
|
Paralogues |
Mgi-Mir-184-P7
Mgi-Mir-184-P8a
Mgi-Mir-184-P8b
Mgi-Mir-184-P8c
Mgi-Mir-184-P8d
Mgi-Mir-184-P9
Mgi-Mir-184-P10
Mgi-Mir-184-P11
Mgi-Mir-184-P12
Mgi-Mir-184-P13a
Mgi-Mir-184-P13b
Mgi-Mir-184-P14
Mgi-Mir-184-P15a1
Mgi-Mir-184-P15a2
Mgi-Mir-184-P15a3
Mgi-Mir-184-P15a4
Mgi-Mir-184-P15a5
Mgi-Mir-184-P15a6
Mgi-Mir-184-P15a7
Mgi-Mir-184-P15b
Mgi-Mir-184-P15c
Mgi-Mir-184-P15d
Mgi-Mir-184-P15e1
Mgi-Mir-184-P15e2
Mgi-Mir-184-P15e3
Mgi-Mir-184-P15f
Mgi-Mir-184-P15g1
Mgi-Mir-184-P15g2
Mgi-Mir-184-P15g3
Mgi-Mir-184-P15h
Mgi-Mir-184-P15i
Mgi-Mir-184-P15j
Mgi-Mir-184-P15k
Mgi-Mir-184-P15l1
Mgi-Mir-184-P15l2
Mgi-Mir-184-P15m
Mgi-Mir-184-P15n
Mgi-Mir-184-P15p
Mgi-Mir-184-P15q
Mgi-Mir-184-P15r
Mgi-Mir-184-P15s
Mgi-Mir-184-P15t
Mgi-Mir-184-P15u
|
Orthologues |
Aae-Mir-184
Aca-Mir-184
Aga-Mir-184
Agr-Mir-184
Ami-Mir-184
Asu-Mir-184
Bfl-Mir-184
Bge-Mir-184
Bko-Mir-184
Bla-Mir-184
Bpl-Mir-184
Bta-Mir-184
Cfa-Mir-184
Cin-Mir-184
Cja-Mir-184
Cli-Mir-184
Cmi-Mir-184
Cpi-Mir-184
Cpo-Mir-184
Dan-Mir-184
Dgr-Mir-184
Dlo-Mir-184
Dma-Mir-184
Dme-Mir-184
Dmo-Mir-184
Dno-Mir-184
Dpu-Mir-184
Dsi-Mir-184
Dya-Mir-184
Eba-Mir-184
Eca-Mir-184
Egr-Mir-184
Esc-Mir-184
Ete-Mir-184
Gga-Mir-184
Gja-Mir-184
Gpa-Mir-184
Gsa-Mir-184
Gsp-Mir-184
Hme-Mir-184
Hsa-Mir-184
Isc-Mir-184
Laf-Mir-184
Lan-Mir-184
Lch-Mir-184
Lhy-Mir-184
Loc-Mir-184
Mdo-Mir-184
Mml-Mir-184
Mmr-Mir-184
Mmu-Mir-184
Mom-Mir-184
Neu-Mir-184
Npo-Mir-184
Oan-Mir-184
Ocu-Mir-184
Ofu-Mir-184
Pab-Mir-184
Pau-Mir-184
Pbv-Mir-184
Pdu-Mir-184
Pfl-Mir-184
Pma-Mir-184
Pmi-Mir-184
Pve-Mir-184
Rno-Mir-184
Rph-Mir-184
Sha-Mir-184
Sko-Mir-184
Sne-Mir-184
Snu-Mir-184
Spt-Mir-184
Spu-Mir-184
Sto-Mir-184
Tca-Mir-184
Tgu-Mir-184
Tur-Mir-184
War-Mir-184
Xtr-Mir-184
|
Node of Origin (locus) |
C. gigas
|
Node of Origin (family) |
Nephrozoa
|
Genome context (CGI_GCA_000297895.1) |
scaffold43150: 64048-64105 [-]
Ensembl
|
Clustered miRNAs (< 50kb from Mir-184-P15o) |
Mir-184-P8a
scaffold43150: 62920-62976 [-]
Ensembl
Mir-184-P15s
scaffold43150: 63192-63248 [-]
Ensembl
Mir-184-P15t
scaffold43150: 63471-63527 [-]
Ensembl
Mir-184-P15n
scaffold43150: 63749-63806 [-]
Ensembl
Mir-184-P15o
scaffold43150: 64048-64105 [-]
Ensembl
Mir-184-P15u
scaffold43150: 64385-64441 [-]
Ensembl
Mir-184-P15p
scaffold43150: 65310-65367 [-]
Ensembl
Mir-184-P10
scaffold43150: 66053-66110 [-]
Ensembl
Mir-184-P8d
scaffold43150: 66305-66362 [-]
Ensembl
Mir-184-P13b
scaffold43150: 66456-66512 [-]
Ensembl
Mir-184-P14
scaffold43150: 66584-66641 [-]
Ensembl
Mir-184-P15q
scaffold43150: 66926-66983 [-]
Ensembl
Mir-184-P15r
scaffold43150: 67056-67113 [-]
Ensembl
Mir-184-P13a
scaffold43150: 67584-67641 [-]
Ensembl
|
Seed |
GGACGGA |
Precursor (pre-Mir +30nt flank) |
CUUGAAGUUAGUUAAUUUCUUAAUGCGUUCCCGUAUCAUACAUUCGUCACAGUGACAUUAAAACACUGGACGGAAGUCUGAUAAGGGAUCGCUAAAGGAACCUCUUCAUAAUGUCAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUGAAGUUAGUUAAUU--| AAU U G U A A GACAU
UCUU GCG UCCC UAUCA AC UUCGUC CAGU \
AGGA CGC AGGG AUAGU UG AGGCAG GUCA U
AAACUGUAAUACUUCUCCA^ AAU U A C A - CAAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Star sequence |
Mgi-Mir-184-P15o_5p* |
mirBase accession | None |
Sequence |
0- CCGUAUCAUACAUUCGUCACAGU -23
Get sequence
|
Mature sequence |
Mgi-Mir-184-P15o_3p |
mirBase accession | None |
Sequence |
36- UGGACGGAAGUCUGAUAAGGGA -58
Get sequence
|