MirGeneDB ID | Xla-Mir-184-P4 |
Family name |
MIR-184 (all species) |
Seed |
GGACGGA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
xla-mir-184
|
Paralogues |
Xla-Mir-184-P3
|
Orthologues |
Aae-Mir-184
Aca-Mir-184
Ami-Mir-184
Asu-Mir-184
Bfl-Mir-184
Bge-Mir-184
Bla-Mir-184
Bpl-Mir-184
Bta-Mir-184
Cfa-Mir-184
Cin-Mir-184
Cli-Mir-184
Cmi-Mir-184
Cpi-Mir-184
Cpo-Mir-184
Dan-Mir-184
Dma-Mir-184
Dme-Mir-184
Dmo-Mir-184
Dno-Mir-184
Dpu-Mir-184
Dsi-Mir-184
Dya-Mir-184
Efe-Mir-184-o4
Esc-Mir-184
Ete-Mir-184
Gga-Mir-184
Gja-Mir-184
Hme-Mir-184
Hsa-Mir-184
Isc-Mir-184
Lan-Mir-184
Lch-Mir-184
Loc-Mir-184
Mdo-Mir-184
Mml-Mir-184
Mmu-Mir-184
Npo-Mir-184
Oan-Mir-184
Ocu-Mir-184
Pbv-Mir-184
Pfl-Mir-184
Pma-Mir-184
Pmi-Mir-184
Rno-Mir-184
Sha-Mir-184
Sko-Mir-184
Spt-Mir-184
Spu-Mir-184
Sto-Mir-184
Tca-Mir-184
Tgu-Mir-184
Xtr-Mir-184
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030729.1: 34556068-34556129 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGAUCCCUCACCAGAUGCCAGUAUCACUUCCUUAUCACUUUUCCAGCCCAGCUUUUCAUGACAAACUGUUGGACGGAGAACUGAUAAGGCUGUGUGACUGUCAAACUCUUCUGGACGUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGAUCCCUCACCAGAU--|C AU UU C AGC UUUUCAU
G CAGU CAC CCUUAUCA UUUUCC CCAGC \
C GUCA GUG GGAAUAGU AAGAGG GGUUG G
CUUUGCAGGUCUUCUCAAA^U GU UC C CA- UCAAACA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Xla-Mir-184-P4_5p* |
mirBase accession | MIMAT0046495 |
Sequence |
0- CCUUAUCACUUUUCCAGCCCAGC -23
Get sequence
|
Mature sequence |
Xla-Mir-184-P4_3p |
mirBase accession | MIMAT0046496 |
Sequence |
40- UGGACGGAGAACUGAUAAGGCU -62
Get sequence
|