Mir-184-o5

MirGeneDB ID

Hru-Mir-184-o5

Family name

MIR-184 (all species)

Species

Red Abalone (Haliotis rufescens)

MiRBase ID

Paralogues

Hru-Mir-184-o6

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lgi-Mir-184-P5 Lhy-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Ofu-Mir-184 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tur-Mir-184 War-Mir-184 Xtr-Mir-184

Node of Origin (locus)

H. rufescens

Node of Origin (family)

Nephrozoa

Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)

JALGQA010000014.1: 18032507-18032564 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-184-o5)

Mir-184-o6 JALGQA010000014.1: 18030619-18030676 [-] UCSC Ensembl
Mir-184-o5 JALGQA010000014.1: 18032507-18032564 [-] UCSC Ensembl

Seed

GGACGGA

Precursor
(pre-Mir +30nt flank)

AGCAACAUCUCGCACUACAUGAUCACGUUUCCUUGUCACUGUUUCGUCCCGUGUGUUAAGCGAGACUGGACGGAAAACUGAUAAGGGCACGUGUUGUGUUUAACUUCCUAGGCGGCGU

Get precursor sequence

Structure

        10           20        30        40        50        
AGCAACAUCUCGCACUA---| UG U     U         CUG        C  GUGUU 
                    CA  A CACGU UCCUUGUCA   UUUCGUCC GU     A
                    GU  U GUGCA GGGAAUAGU   AAGGCAGG CA     A
UGCGGCGGAUCCUUCAAUUU^ GU -     C         CAA        U  GAGCG 
      110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To	To

Star sequence

Hru-Mir-184-o5_5p*

mirBase accession

None

Sequence

0- CCUUGUCACUGUUUCGUCCCGU -22

Get sequence

Mature sequence

Hru-Mir-184-o5_3p

mirBase accession

None

Sequence

36- UGGACGGAAAACUGAUAAGGGC -58

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