Mir-184-P39

MirGeneDB ID

Llo-Mir-184-P39

Family name

Species

MiRBase ID

Paralogues

Llo-Mir-184-P32 Llo-Mir-184-P33 Llo-Mir-184-P34 Llo-Mir-184-P35 Llo-Mir-184-P36 Llo-Mir-184-P37 Llo-Mir-184-P38 Llo-Mir-184-P40

Orthologues

Aae-Mir-184 Aca-Mir-184 Aga-Mir-184 Agr-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bko-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cja-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dgr-Mir-184 Dlo-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Eba-Mir-184 Eca-Mir-184 Egr-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Gpa-Mir-184 Gsa-Mir-184 Gsp-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Laf-Mir-184 Lan-Mir-184 Lch-Mir-184 Lhy-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmr-Mir-184 Mmu-Mir-184 Mom-Mir-184 Neu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Ofu-Mir-184 Pab-Mir-184 Pau-Mir-184 Pbv-Mir-184 Pdu-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Pve-Mir-184 Rno-Mir-184 Rph-Mir-184 Sha-Mir-184 Sko-Mir-184 Sne-Mir-184 Snu-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Tur-Mir-184 War-Mir-184 Xtr-Mir-184

Node of Origin (locus)

Lineidae

Node of Origin (family)

Nephrozoa

Genome context
(GCA_910592395.2_tnLinLong1)

OU343005.1: 1398618-1398675 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-184-P39)

Mir-184-P38 OU343005.1: 1398286-1398342 [+] Ensembl
Mir-184-P39 OU343005.1: 1398618-1398675 [+] Ensembl
Mir-184-P40 OU343005.1: 1398913-1398972 [+] Ensembl

Seed

GGACGGA

Precursor
(pre-Mir +30nt flank)

AAUGCGUAAUGUAAUUGUCCGAAAGCGGGUCCUCGUCAUUUGUCCGGGCCUGUUUUUAUACACUACUGGACGGAGAACUGAUAAGGGCCCGAAUAGGACCGAACAACAGUUGAAAGAU

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Structure

        10           20        30        40        50         
AAUGCGUAAUGUAAUUG---|  GAAAG        CG   U  G    GG  U  UUUUA 
                    UCC     CGGGUCCU  UCA UU UCCG  CC GU     \
                    AGG     GCCCGGGA  AGU AA AGGC  GG CA     U
UAGAAAGUUGACAACAAGCC^  AUAA-        AU   C  G    A-  U  UCACA 
      110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

No	No	No	No	No	No

Star sequence

Llo-Mir-184-P39_5p* (predicted)

mirBase accession

None

Sequence

0- CCUCGUCAUUUGUCCGGGCCUGU -23

Get sequence

Mature sequence

Llo-Mir-184-P39_3p

mirBase accession

None

Sequence

36- UGGACGGAGAACUGAUAAGGGC -58

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