Mir-3-P6

MirGeneDB ID

Tca-Mir-3-P6

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-309c

Paralogues

Tca-Mir-3-P4 Tca-Mir-3-P5 Tca-Mir-3-P7-v1 Tca-Mir-3-P7-v2 Tca-Mir-3-P8 Tca-Mir-3-P9a Tca-Mir-3-P9b Tca-Mir-3-P10 Tca-Mir-3-P11 Tca-Mir-3-P12a Tca-Mir-3-P12b Tca-Mir-3-P13a Tca-Mir-3-P13b

Orthologues

Dma-Mir-3 Dpu-Mir-3

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Pancrustacea

Genome context
(Tcas5.2)

LG5: 7457335-7457391 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P6)

Mir-9-o9-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-o9-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P10b LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAACAUCCAAAAAAUUCCGGUACCACUUUUGGAUAAACCAUACUCAGUUGAUGUAUUAUAAAGCAUCACUGGGUAGAGUUUGUCCAAUAGUUUUACCACCAACCACAAUUUCGCAAC

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Structure

        10          20        30        40        50        
AAACAUCCAAAAAAUUCC--|   CC   U          CA        U    UAUU 
                    GGUA  ACU UUGGAUAAAC  UACUCAGU GAUG    A
                    CCAU  UGA AACCUGUUUG  AUGGGUCA CUAC    U
CAACGCUUUAACACCAACCA^   UU   U          AG        -    GAAA 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-3-P6_5p*

mirBase accession

MIMAT0045526

Sequence

0- GGAUAAACCAUACUCAGUUGAUG -23

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Mature sequence

Tca-Mir-3-P6_3p

mirBase accession

MIMAT0045527

Sequence

35- UCACUGGGUAGAGUUUGUCCAA -57

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