MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-2-P5d

Family name MIR-2 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-2944b
Paralogues Tca-Mir-2-P1-v1  Tca-Mir-2-P2a  Tca-Mir-2-P2b  Tca-Mir-2-P3-v1  Tca-Mir-2-P4-v1  Tca-Mir-2-P5c  Tca-Mir-2-P5e  Tca-Mir-2-P7  Tca-Mir-2-P8 
Orthologues Cel-Mir-2-o5  Dan-Mir-2-P5  Dlo-Mir-2-P5  Dma-Mir-2-P5  Dme-Mir-2-P5  Dmo-Mir-2-P5  Dpu-Mir-2-P5  Dsi-Mir-2-P5  Dya-Mir-2-P5  Gpa-Mir-2-P5-v1  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)		 LG5: 7455840-7455901 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P5d)		 Mir-9-P9b-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-P9b-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P5d LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl
Seed AAGGAAC
Precursor
(pre-Mir +30nt flank)		 
UUCUGAAGACUUCAUUUCGCAUAAUGCAUUUAAGGAACUACAGGUGUGAUGUGUGAUUUCAUUAAACGUAUCACAGCCGUAGUUGCCUUACUGUAUUUGUGAAAUCUCAACAAAAUUCGAAC
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Structure
        10            20        30         40         50          
UUCUGAAGACUUCAUUU----|   U      UU     -      A  -         UGAUUU 
                     CGCA AAUGCA  UAAGG AACUAC GG UGUGAUGUG      \
                     GUGU UUAUGU  AUUCC UUGAUG CC ACACUAUGC      C
CAAGCUUAAAACAACUCUAAA^   -      C-     G      -  G         AAAUUA 
120       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-2-P5d_5p
mirBase accessionMIMAT0018746
Sequence 
0- UAAGGAACUACAGGUGUGAUGUG -23
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Co-mature sequence

Tca-Mir-2-P5d_3p
mirBase accessionMIMAT0018747
Sequence 
38- UAUCACAGCCGUAGUUGCCUUACU -62
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